はじめての環境DNA
研究室から現場まで、実践で使える知識を!

環境DNA論文について

Ficetolaが2008年に環境DNAでウシガエルを検出した事をきっかけに、環境DNAの検出技術は特定の種のみならず、複数種の同時検出が可能となりました。また、近年ではさらに生物の状態を反映するRNAの検出ができるようになってきています。

全世界で活発に研究されている環境DNAについて少しでも理解しやすくなるようにこのページを作りました。ぜひ仕事や研究に有効活用していただければと思います。時々更新します。

2008年以降の環境DNA論文数の推移

大型脊椎動物を対象とした環境DNAメタバーコーディングが使用され始めた2014年ごろから論文公開本数が上昇傾向にあります。メタバーコーディングを使って生物相を検出する研究が多くなったからでしょうか。

2020年の環境DNA論文数の推移

2020年は月平均で16本程度の環境DNA論文が全世界を通して公開されているようです。

最終更新: 2020/10/22

環境DNA論文のサマリーシート(2020年)

2020年限定ですが簡単な訳をつけて環境DNA論文を日本語で検索できるようにしました。

最終更新: 2020/10/22

No. Title 和訳(DeepL+意訳) Author
1 Using environmental DNA analysis to assess the occurrence and abundance of the endangered amphidromous fish Plecoglossus altivelis ryukyuensis 環境DNA分析を使用して絶滅危惧種である両側回遊性のリュウキュウアユの出現と個体数の評価 Akamatsu et al.
2 Uncovering the complete biodiversity structure in spatial networks - the example of riverine systems 空間ネットワークの完全な生物多様性構造の解明–河川システムの例 Altermatt et al.
3 Steps towards a more efficient use of chironomids as bioindicators for freshwater bioassessment: Exploiting eDNA and other genetic tools 淡水生物評価のバイオ指標としてのユスリカのより効率的な使用に向けた歩み:eDNAおよびその他の遺伝的ツールの活用 Czechowski et al.
4 Environmental DNA reveals seasonal shifts and potential interactions in a marine community 環境DNAは季節的な変化と海洋コミュニティの潜在的な相互作用を明らかにする Djurhuus et al.
5 Detection of freshwater mussels (Unionidae) using environmental DNA in riverine systems 河川システムにおける環境DNAを使用したカラスガイ(イシガイ科)の検出 Gasparini et al.
6 Finding Crush: Environmental DNA Analysis as a Tool for Tracking the Green Sea Turtle Chelonia mydas in a Marine Estuary Finding Crush:海洋河口のアオウミガメChelonia mydasを追跡するためのツールとしての環境DNA分析 Harper et al.
7 Use of environmental DNA (eDNA) in streams to detect feral swine (sus scrofa) 野生ブタ(イノシシ)を検出するための河川での環境DNA(eDNA)の使用 Hauger et al.
8 From eDNA to citizen science: emerging tools for the early detection of invasive species 環境DNAから市民科学まで:侵入種の早期発見のための新しいツール Larson et al.
9 A comparison of eDNA to camera trapping for assessment of terrestrial mammal diversity 陸棲哺乳類の多様性評価のためのカメラトラップと環境DNAの比較 Leempoel et al.
10 Multiple lines of genetic inquiry reveal effects of local and landscape factors on an amphibian metapopulation 複数の遺伝的調査は両生類のメタ個体群に対する局所的および景観的要因の影響を明らかにする Parsley et al.
11 The future of fish-based ecological assessment of European rivers: from traditional EU Water Framework Directive compliant methods to eDNA metabarcoding-based approaches 欧州の河川の魚に基づく生態学的評価の未来:従来のEU水枠組み指令に準拠した方法から環境DNAメタバーコーディングに基づくアプローチまで Pont et al.
12 Analytical validation and field testing of a specific qPCR assay for environmental DNA detection of invasive European green crab (Carcinus maenas) 侵略的ヨーロッパミドリガニ(Carcinus maenas)の環境DNA検出のための特異的qPCRの分析検証と現場試験 Roux et al.
13 Assessing the potential of environmental DNA metabarcoding for monitoring Neotropical mammals: a case study in the Amazon and Atlantic Forest, Brazil Sales et al.
14 Increased eDNA detection sensitivity using a novel highvolumewater sampling method 新規的な大容量水サンプリング法を用いた環境DNAの検出感度の増加 Schabacker et al.
15 A round-robin evaluation of the repeatability andreproducibility of environmental DNA assays for dreissenid mussels ムラサキイガイの環境DNA評価の反復性と再現性のラウンドロビン評価 Sepulveda et al.
16 A mesocosm comparison of laboratory-based and on-site eDNA solutions for detection and quantification of striped bass (Morone saxatilis) in marine ecosystems 海洋生態系におけるストライプバス(Morone saxatilis)の検出と定量化のための、実験室ベースとオンサイトでの環境DNA法によるメソコスム比較 Skinner et al.
17 Experimental assessment of optimal lotic eDNA sampling and assay multiplexing for a critically endangered fish 絶滅の危機に瀕する魚類のための局所的な環境DNAサンプリングと複数の検証法 Wood et al.
18 Development of a TaqMan qPCR protocol for detecting Acipenser ruthenus in the Volga headwaters from eDNA samples ボルガ源流域におけるAcipenser ruthenusを環境DNAサンプルから検出するためのTaqMan qPCRプロトコルの開発 Schenekar et al.
19 Environmental DNA‑based xenomonitoring for determining Schistosoma presence in tropical freshwaters 熱帯淡水域における 住血吸虫属の存在を判定するための環境DNAベースの異種生物モニタリング Alzaylaee_et al.
20 Spatial and temporal patterns of environmental DNA detection to inform sampling protocols in lentic and lotic systems 流域および止水域のサンプリングプロトコルに情報を与えるための環境DNA検出の空間的・時間的パターン Bedwell et al.
21 Groundtruthing of pelagic forage fish detected by hydroacoustics in a whale feeding area using environmental DNA 環境DNAを用いたクジラ餌場のハイドロアコースティクスで検出された遠洋性採餌魚のグランドトゥルーチング Berger et al.
22 Maximizing fish detection with eDNA metabarcoding 環境DNAメタバーコーディングによる魚群探知の最大化 Bessey et al.
23 Exploring Environmental DNA (eDNA) to Assess Biodiversity of Hard Substratum Faunal Communities on the Lucky Strike Vent Field (Mid-Atlantic Ridge) and Investigate Recolonization Dynamics After an Induced Disturbance ラッキーストライクベントフィールド(中大西洋海嶺)における硬質基質動物群集の生物多様性を評価するための環境DNA(eDNA)の探索と撹乱後の再コロニー化ダイナミクスの調査水生環境DNAのサンプル前処理とPCR前処理の実践ガイド Cowart et al.
24 A practival guide to sample presrvation and pre-PCR processing of aquatic environmental DNA 水生環境DNAのサンプル前処理とPCR前処理の実践ガイド Kumer et al.
25 Are migratory waterfowl vectors of seagrass pathogens? 渡り鳥の水鳥は海草の病原体の媒介者なのか? Menning et al.
26 Space invaders: Searching for invasive Smallmouth Bass (Micropterus dolomieu) in a renowned Atlantic Salmon (Salmo salar) river 宇宙の侵略者。アトランティックサーモン(Salmo salar)の有名な河川での侵略的スモールマウスバス(Micropterus dolomieu)の探索 O'Sullivan et al.
27 Sedimentary eDNA provides different information on timescale and fish species composition compared with aqueous eDNA 堆積物の環境DNAは、水中の環境DNAと比較して、時間スケールや魚種の組成について異なる情報を提供する Sakata et al.
28 Complementary molecular methods reveal comprehensive phylogenetic diversity integrating inconspicuous lineages of early-diverged wood-decaying mushrooms 補完的分子法を用いて、早発木質腐朽キノコの隠れた系統を統合した系統多様性の解明 Shirouzu et al.
29 Identifying conservation priorities in a defaunated tropical biodiversity hotspot 衰退した熱帯の生物多様性ホットスポットにおける保全の優先順位の特定 Tilker et al.
30 Novel universal primers for metabarcoding environmental DNA surveys of marine mammals and other marine vertebrates 海洋哺乳類およびその他の海洋脊椎動物の環境DNAメタバーコーディング調査のための新規ユニバーサルプライマーの開発 Valsecchi et al.
32 Analysis of a coastal North Sea fish community: Comparison of aquatic environmental DNA concentrations to fish catches 北海沿岸の魚類群集の解析 : 水生環境DNA濃度と漁獲量の比較 van Bleijswijk et al.
33 Testing multiple substrates for terrestrial biodiversity monitoring using environmental DNA (eDNA) metabarcoding 環境DNA(eDNA)メタバーコーディングを用いた陸域生物多様性モニタリングのための複数の基盤的なテスト Van der Heyde
34 Holistic pelagic biodiversity monitoring of the Black Sea via eDNA metabarcoding approach: From bacteria to marine mammals 環境DNAメタバーコーディングアプローチによる黒海の遠洋生物多様性モニタリング : バクテリアから海洋哺乳類まで Zhang et al.
35 Environmental DNA detection of Arctic char (Salvelinus alpinus) in Irish lakes: Development and application of a species-specific molecular assay アイルランドの湖沼における北極イワナ(Salvelinus alpinus)の環境DNA検出 : 種特異的分子分析法の開発と応用 Mirinmin et al.
36 Moving eDNA surveys onto land: Strategies for active eDNA aggregation to detect invasive forest insects 環境DNA調査を陸上 : 侵略的な森林昆虫を検出するための能動的な環境DNAアグリゲーションの戦略 Valentin et al.
37 DNA and eDNA-based tracking of the North African sharptooth catfish Clarias gariepinus 北アフリカのsharptooth catfish(Clarias gariepinus)のDNAとeDNAに基づく追跡 Elberri et al.
38 Advances and prospects of environmental DNA in neotropical rainforests 新熱帯雨林における環境DNAの進歩と展望 Zinger et al.
39 Environmental DNA sampling informs fish eradication efforts: case studies and lessons learned 環境DNAサンプリングが魚類の根絶に役立つ:事例研究と教訓 Carim et al.
40 Simple, sensitive and species-specific assays for detecting quagga and zebra mussels (Dreissena rostriformis bugensis and D. polymorpha) using environmental DNA 環境DNAを用いたquaggaおよびzebra mussels(Dreissena rostriformis bugensisおよびD. polymorpha)の検出のための単純かつ高感度で種特異的な分析法 Blackman et al.
41 Standards for Methods Utilizing Environmental DNA for Detection of Fish Species 魚類の種の検出に環境DNAを利用した方法の基準 Shu et al.
42 Environmental DNA (eDNA) detection of marine aquatic invasive species (AIS) in Eastern Canada using a targeted species-specific qPCR approach 標的化された種特異的qPCR法を用いたカナダ東部の海洋水生侵略種(AIS)の環境DNA(eDNA)検出 LeBlanc et al.
43 Reliable eDNA detection and quantification of the European weather loach (Misgurnus fossilis) Msgurnus fossilisの信頼性の高い環境DNA検出と定量化 Brys et al.
44 Genetic tools in the management of invasive mammals: recent trends and future perspectives 侵略的哺乳類の管理における遺伝子ツール:最近の傾向と将来の展望 Browett et al.
45 A muddy time capsule: using sediment environmental DNA for the long-term monitoring of coastal vegetated ecosystems 泥だらけのタイムカプセル:沿岸植生生態系の長期モニタリングのための堆積物環境DNAの利用 Forster et al.
46 Revising the range of Rocky Mountain tailed frog, Ascaphus montanus, in British Columbia, Canada, using environmental DNA methods 環境DNA法を用いたカナダ・ブリティッシュコロンビア州のAscaphus montanusの生息域の見直し Hobbs et al.
47 Validating metabarcoding-based biodiversity assessments with multi-species occupancy models: A case study using coastal marine eDNA 多種占有モデルを用いたメタバーコーディングに基づく生物多様性評価の検証 沿岸海域の海洋環境DNAを用いたケーススタディ McClenaghan et al.
48 Validating environmental DNA metabarcoding for marine fishes in diverse ecosystems using a public aquarium 水族館を利用した多様な生態系における海洋魚類の環境DNAメタバーコーディングの検証 Morey et al.
49 Detection of lamprey in Southernmost South America by environmental DNA (eDNA) and molecular evidence for a new species 環境DNAによる南米最南端のヤツメの検出と新種の分子的証拠 Nardi et al.
50 Are bacteria potential sources of fish environmental DNA? バクテリアは魚の環境DNAの潜在的な供給源になるのか? Nukazawa et al.
51 Fishing for mammals: Landscape-level monitoring of terrestrial and semi-aquatic communities using eDNA from riverine systems 哺乳類を釣る: 河川系の環境DNAを用いた陸生・半水生生物群集の景観レベルでのモニタリング Sales et al.
52 Parallel, targeted analysis of environmental samples via highthroughput quantitative PCR ハイスループット定量PCRによる環境試料のパラレル・ターゲット解析 Wilcox et al.
53 Environmental DNA and Specific Primers for Detecting the Invasive Species Ectopleura crocea (Hydrozoa: Anthoathecata) in Seawater Samples 海水試料中の外来種Ectopleura crocea (Hydrozoa: Anthoathecata)を検出するための環境DNAと特異的プライマーの開発 Kim et al.
54 Detecting Native Freshwater Fishes Using Novel Non-invasive Methods 新しい非侵襲的手法を用いた在来淡水魚の検出] Castaneda et al.
55 The effect of temperature on environmental DNA degradation of Japanese eel ニホンウナギの環境DNAの分解に及ぼす温度の影響 Kasai et al.
56 Enhancing tropical conservation and ecology research with aquatic environmental DNA methods: an introduction for non-environmental DNA specialists 水生環境DNA法による熱帯保全・生態学研究の強化:非環境DNA専門家のための入門書 Huerlimann et al.
57 Organic matter reduces the amount of detectable environmental DNA in freshwater 有機物は淡水中の検出可能な環境DNA量を減少させる Bochove et al.
58 Effects of sampling seasons and locations on fish environmental DNA metabarcoding in dam reservoirs ダム貯水池における魚類環境DNAメタバーコーデングに及ぼすサンプリング季節性と場所の影響 Hayami et al.
59 Chapter Ten - Informing marine spatial planning decisions with environmental DNA 第10章 環境DNAを用いた海洋空間計画の意思決定の情報化 Bani et al.
60 Validation of an environmental DNA protocol to detect a stream‐breeding amphibian, the Streamside Salamander (Ambystoma barbouri) 流域で繁殖する両生類であるStreamside Salamander(Ambystoma barbouri)を検出するための環境DNAプロトコルの検証 Witzel et al.
61 Detecting invertebrate ecosystem service providers in orchards: traditional methods versus barcoding of environmental DNA in soil 果樹園における無脊椎動物の生態系サービス提供者の検出:従来の方法と土壌中の環境DNAのバーコーディングの比較 Todd et al.
62 Qualitative and quantitative detection using eDNA technology: A case study of Fenneropenaeus chinensis in the Bohai Sea eDNA技術を用いた定性・定量的検出 : Bohai海域におけるコウライエビのの事例研究 Li et al.
63 Dead or alive: sediment DNA archives as tools for tracking aquatic evolution and adaptation 生か死か:水生生物の進化と適応を追跡するためのツールとしての堆積物DNAアーカイブ Ellegaard
64 Analysis of sea lamprey environmental DNA during lampricide treatment in a tributary of Lake Ontario オンタリオ湖の支流におけるlampricede処理中のウミヤツメ環境DNA分析 Kaitlyn et al.
65 Detection of the Amphibian Pathogens Chytrid Fungus (Batrachochytrium dendrobatidis) and Ranavirus in West Texas, USA, Using Environmental DNA 環境DNAを用いた米国西テキサス州における両生類病原体のChytrid Fungus(Batrachochytrium dendrobatidis)とRanavirusの検出 Barnes et al.
66 Supervised machine learning is superior to indicator value inference in monitoring the environmental impacts of salmon aquaculture using eDNA metabarcodes 教師付き機械学習は環境DNAメタバーコーディングを用いたサケの繁殖環境モニタリング時の指標値推論において優れている Frühe et al.
67 Identifying error and accurately interpreting eDNA metabarcoding results: A case study to detect vertebrates at arid zone waterholes 誤差の特定とeDNAメタバーコーディング結果の正確な解釈 : 乾燥地帯の水飲み場における脊椎動物検出のためのケーススタディ Furlan et al.
68 Environmental DNA analysis shows high potential as a tool for estimating intraspecific genetic diversity in a wild fish population 環境DNA分析は野外魚類個体群の種内遺伝的多様性を推定するツールとして高い可能性を示す Tsuji et al.
69 Estimations of Riverine Distribution, Abundance, and Biomass of Anguillid Eels in Japan and Taiwan Using Environmental DNA Analysis 環境DNA解析を用いた日本と台湾におけるAnguillid Eelsの河川分布・量・バイオマスの推定
70 Environmental DNA metabarcoding for freshwater bivalves biodiversity assessment: methods and results for the Western Palearctic (European sub-region) 淡水二枚貝の生物多様性評価のための環境DNAメタバーコーディング : 西南極海(ヨーロッパ亜地域) の方法と結果 Prié et al.
71 Monitoring the silver carp invasion in Africa: a case study using environmental DNA (eDNA) in dangerous watersheds アフリカにおけるSilver carpの侵入監視:危険な流域における環境DNA(eDNA)を用いた事例研究 Crookes et al.
72 Using environmental DNA to detect estuarine crocodiles, a cryptic-ambush predator of humans 環境DNAを用いた人を捕食するワニを河口域から検出する
73 Using environmental DNA to monitor the spatial distribution of the California Tiger Salamander Ambystoma californiense 環境DNAを用いたCalifornia Tiger Salamander(Ambystoma californiense)の空間分布のモニタリング Kieran et al.
74 A drop in the ocean: Monitoring fish communities in spawning areas using environmental DNA 海中の中の一滴 : 環境DNAを用いた産卵地域の魚類群集モニタリング Ratcliffe et al.
75 Are Environmental DNA Methods Ready for Aquatic Invasive Species Management? 環境DNA法は水生外来種管理のための準備ができているか? Sepulveda et al.
76 eDNA and metabarcoding for rewilding projects monitoring, a dietary approach 再野生化プロジェクトのモニタリングのための環境DNAとメタバーコーディング、食事的アプローチ
77 Improved Environmental DNA Reference Library Detects Overlooked Marine Fishes in New Jersey, United States 改良された環境DNAリファレンスライブラリーは米国ニュージャージー州の見落とされた海洋魚類を検出する Stoeckle et al.
78 Caged fish experiment and hydrodynamic bidimensional modeling highlight the importance to consider 2D dispersion in fluvial environmental DNA studies ケージ内の魚類を使った実験と流体力学的2次元モデリングは河川環境DNAにおける2次元分散を考慮することの重要性を強調する Laporte et al.
79 Molecular and morphological signatures for extreme environmental adaptability of the invasive mussel Brachidontes pharaonis 侵略的な貝(Brachidontes pharaonis)の極端な環境適応性に関する分子学的・形態学的特徴 Mohammed-Geba et al.
80 Monitoring freshwater fish communities in large rivers using environmental DNA (eDNA) metabarcoding and a long‐term electrofishing survey 環境DNA(eDNA)メタバーコーディングと長期の電気漁法を用いた大河川における魚類群集のモニタリング Goutte et al.
81 Environmental DNA can act as a biodiversity barometer of anthropogenic pressures in coastal ecosystems 環境DNAは沿岸生態系における人為的な圧力の生物多様性のバロメーターとして機能する DiBattista et al.
82 Macroinvertebrate community diversity and habitat quality relationships along a large river from targeted eDNA metabarcode assays 標準的な環境DNAメタバーコーディング評価に基づく大河川の大型脊椎動物群集の多様性と生息地の質の関係 Marshall et al.
83 A comparison of European eel Anguilla anguilla eDNA concentrations to fyke net catches in five Irish lakes アイルランドの5つの湖におけるネット漁法とヨーロッパウナギ(Anguilla anguilla)の環境DNA濃度の比較 Weldon et al.
84 Quantitative evaluation of intraspecific genetic diversity in a natural fish population using environmental DNA analysis 環境DNA分析による天然魚類個体群の種内遺伝的多様性の定量的な評価 Tsuji et al.
85 Optimizing an eDNA protocol for estuarine environments: Balancing sensitivity, cost and time 河口域環境での環境DNAプロトコルの最適化: 感度、コスト、時間のバランス Sanches et al.
86 eDNA‐based monitoring: Advancement in management and conservation of critically endangered killifish species 環境DNAによるモニタリング: 絶滅危機のメダカの管理と保全の進展 Mauvisseau et al.
87 Identifying Under‐Ice Overwintering Locations of Juvenile Chinook Salmon by Using Environmental DNA 環境DNAを用いたChinookサーモンの幼魚の氷下の越冬場所の特定 Khalsa et al.
88 60 specific eDNA qPCR assays to detect invasive, threatened, and exploited freshwater vertebrates and invertebrates in Eastern Canada カナダ東部で侵略され、絶滅の危機に晒され、悪用されている淡水の脊椎動物・無脊椎動物を検出するための60の特異的な環境DNAqPCR評価法 Hernandez et al.
89 Environmental DNA reveals cryptic diversity within the subterranean amphipod genus Pseudocrangonyx Akatsuka & Komai, 1922 (Amphipoda: Crangonyctoidea: Pseudocrangonyctidae) from central Japan 環境DNAから明らかになった地中の端脚類の多様性(Pseudocrangonyx Akatsuka & Komai, 1922)の多様性 Yonezawa et al.
90 Comparing diversity levels in environmental samples: DNA sequence capture and metabarcoding approaches using 18S and COI genes 環境試料における生物多様性レベルの比較: 18sとCOI領域を用いたDNA配列の捕捉とメタバーコーディングによるアプローチ Langen et al.
91 Review and application of environmental DNA (eDNA) investigation of terrestrial species in urban ecosystem 都市生態系における陸棲種の環境DNA(eDNA)調査の検討と応用 Kim et al.
92 Environmental DNA: A promising factor for tuberculosis risk assessment in multi-host settings 環境DNA: 複数の宿主環境における結核リスク評価のための有望な要因 Martínez-Guijosa et al.
93 Application of eDNA as a tool for assessing fish population abundance 魚類個体群の豊富さを評価するためのツールとしての環境DNAの応用 Spear et al.
94 Two Ocean Pass: An Alternative Hypothesis for the Invasion of Yellowstone Lake by Lake Trout, and Implications for Future Invasions Two Ocean Pass: イエローストーン湖におけるレイクトラウトの侵入に関する代替仮説と将来の侵入への示唆 Koel et al.
95 Detection of herbivory: eDNA detection from feeding marks on leaves 草食の検出:葉の摂食痕からのeDNA検出 Aoi et al.
96 No evidence that crayfish carcasses produce detectable environmental DNA (eDNA) in a stream enclosure experiment ザリガニの死骸が検出可能な環境DNA(eDNA)を生成するという証拠はない Curtis et al.
97 Aquatic insect community structure revealed by eDNA metabarcoding derives indices for environmental assessment 環境DNAメタバーコーディングにより明らかになった水生昆虫群集構造は環境評価の指標となる Uchida et al.
98 Leveraging eDNA to expand the study of hybrid zones ハイブリッドゾーンの研究を拡大するための環境DNAの活用 Stewart et al.
99 Modeling the ecological status response of rivers to multiple stressors using machine learning: A comparison of environmental DNA metabarcoding and morphological data 機械学習を用いた複数のストレス要因に対する河川の生態状態応答のモデル化: 環境DNAメタバーコーディングと形態学的データの比較 Fan et al.
100 Pathway to Increase Standards and Competency of eDNA Surveys (PISCeS)—Advancing collaboration and standardization efforts in the field of eDNA 環境DNA調査の標準化・能力向上のための道筋(PISCeS)-環境DNA分野における標準化・共同研究の推進 Loeza-Quintana et al.
101 Simultaneous detection of native and invasive crayfish and Aphanomyces astaci from environmental DNA samples in a wide range of habitats in Central Europe 中央ヨーロッパの広範な生息地における環境DNAサンプルからの在来ザリガニと侵入ザリガニおよびAphanomyces astaciの同時検出 Rusch et al.
102 Development and evaluation of fish eDNA metabarcoding assays facilitate the detection of cryptic seahorse taxa (family: Syngnathidae) 魚類の環境DNAメタバーコーデングの評価法はタツノオトシゴ属の検出を容易にする Nester et al.
103 Estimating fish population abundance by integrating quantitative data on environmental DNA and hydrodynamic modeling 環境DNAの定量データと流体モデルの統合による魚類個体数の推定 Fukaya et al.
104 Can environmental DNA be used to detect first arrivals of the cane toad, Rhinella marina , into novel locations? 環境DNAを用いてオオヒキガエル(Rhinella marina)の新生息地への到達を検出可能か? Villacorta-Rath et al.
105 Droplet digital PCR applied to environmental DNA, a promising method to estimate fish population abundance from humic‐rich aquatic ecosystems フミン酸リッチな水棲生態系における環境DNAとデジタルPCRを用いた魚類の個体数推定法の開発 Capo et al.
106 Executing multi-taxa eDNA ecological assessment via traditional metrics and interactive networks 従来のメトリクスと対話型ネットワークを用いた複数分類群の環境DNAによる生態学的評価の実行 Seymour et al.
107 Use of Environmental DNA to Determine Fantail Darter (Etheostoma flabellare) Density in a Laboratory Setting: Effects of Biomass and Filtration Method 実験室環境におけるFantail Darter(Etheostoma flabellare)の密度を決定するための環境DNAの利用: バイオマスとろ過方法の効果 Guivas et al.
108 Exploration of Environmental DNA (eDNA) to Detect Kirtland’s Snake (Clonophis kirtlandii) Kirhland's Snake(Clonophis kirtlandii)を検出するための環境DNAの探索 Ratsch et al.
109 Environmental DNA from plastic and textile marine litter detects exotic and nuisance species nearby ports 港付近に生息する外来種と有害種をプラスチックや繊維質の海洋ごみ由来の環境DNAから検出する Ibabe et al.
110 Capture of Environmental DNA (eDNA) from Water Samples by Flocculation. 凝集による水試料からの環境DNAの捕集 Schill et al.
111 Characterizing the spatial and temporal occurrence patterns of the endangered botiid loach Parabotia curtus by environmental DNA analysis using a newly developed species-specific primer set 新規開発の種特異的プライマーセットを用いた環境DNA解析による絶滅の危機に瀕するドジョウ(Parabotia curtus)の空間的・時間的発生パターン解析 Sugiura et al.
112 Accumulation curves of environmental DNA sequences predict coastal fish diversity in the coral triangle 環境DNA配列の累積曲線はサンゴデルタ地帯の沿岸魚類相の多様性を予測する Juhel et al.
113 The relationship between eDNA particle concentration and organism abundance in nature is strengthened by allometric scaling 自然環境中の環境DNAの粒子密度とサイズと生物の豊富さの関係は非比例的スケーリングによって補強される Yates et al.
114 Use of environmental DNA to detect the invasive aquatic plants Myriophyllum spicatum and Egeria densa in lakes 環境DNAを用いた湖沼における侵略的水生植物 Myriophyllum spicatumとEgeria densaの検出 Kuehne et al.
115 Comparing environmental metabarcoding and trawling survey of demersal fish communities in the Gulf of St. Lawrence, Canada カナダ・セントローレンス湾における環境メタバーコーディングと底生魚群集のトロール調査の比較 Afzali et al.
116 Environmental DNA allows upscaling spatial patterns of biodiversity in freshwater ecosystems 淡水生態系における生物多様性の空間パターンの拡大を可能にする環境DNA Carraro et al.
117 Environmental DNA detection tracks established seasonal occurrence of blacktip sharks (Carcharhinus limbatus) in a semi-enclosed subtropical bay 半閉鎖的亜熱帯性の湾におけるBlacktip sharks(Carcharhinus limbatus)の季節的な発生を追跡する環境DNA検出法の開発 Postaire et al.
118 Pooled samples and eDNA-based detection can facilitate the “clean trade” of aquatic animals 集められたサンプルとeDNAベースの検出は、水生動物の「クリーンな取引」を促進する Brunner
119 Design and Validation of Passive Environmental DNA Samplers (PEDS) using Granular Activated Carbon (GAC) and Montmorillonite Clay (MC) 粒状活性炭(GAC)とモンモリロナイト粘土(MC)を用いた受動的環境DNAサンプラー(PEDS)の設計と検証 Kirtane et al.
120 Assessment of fish biodiversity in four Korean rivers using environmental DNA metabarcoding 環境DNAメタバーコーディングを用いた韓国4河川における魚類の生物多様性の評価 Alam et al.
121 An Optional Low-Cost Method of Extracting Environmental DNA of Macro-Organisms from Filter Membranes in Large Scale eDNA Surveys 大規模な環境DNA調査におけるメンブレンフィルターからの大型生物に由来する環境DNAの低コストな抽出法の検討 Chen et al.
122 Field storage of water samples affects measured environmental DNA concentration and detection 野外での水サンプルの保管は環境DNAの濃度と検出に影響を及ぼす Curtis et al.
123 Piloting an integrated approach for estimation of environmental risk of Schistosoma haematobium infections in pre-school-aged children and their mothers at Barombi Kotto, Cameroon Piloting an integrated approach for estimation of environmental risk of Schistosoma haematobium infections in pre-school-aged children and their mothers at Barombi Kotto, Cameroon Eyre et al.
124 Metabarcoding unsorted kick‐samples facilitates macroinvertebrate‐based biomonitoring with increased taxonomic resolution, while outperforming environmental DNA キックサンプルのメタバーコーディングは環境DNAより優れており、分類学的分解能の向上と大型無脊椎動物のモニタリングを可能とする Pereira‐da‐Conceicoa et al.
125 Development of an environmental DNA metabarcoding assay for aquatic vascular plant communities 水棲の維管束植物群集の環境DNAメタバーコーディング法の開発 Coghlan et al.
126 Understanding leptospirosis eco-epidemiology by environmental DNA metabarcoding of irrigation water from two agro-ecological regions of Sri Lanka スリランカの2つの農業生態学的地域の灌漑用水の環境DNAメタバーコーディングによるレプトスピラ症の生態疫学的な理解 Gamage et al.
127 New barcoding primers for the efficient monitoring of diplonemid diversity ミドリムシ門の多様性を効率的にモニタリングするための新たなバーコーディングプライマー Yabuki et al.
128 Detection of the parasitic nematode, Pseudocapillaria tomentosa, in zebrafish tissues and environmental DNA in research aquaria ゼブラフィッシュ組織中の寄生線虫(Pseudocapillaria tomentosa)の検出と研究用水槽の環境DNAの検出 Norris et al.
129 Methods to maximize environmental DNA (eDNA) for detection the presence of Alligator Gar (Atractosteus spatula) アリゲーターガー(Atractosteus spatula)の生息を検出するための環境DNAの能力を最大化する方法 Nur et al.
130 Development and application of eDNA-based tools for the conservation of white-clawed crayfish white-clawed crayfishの保護のための環境DNAに基づくツールの開発と応用 Troth et al.
131 Calibrating Environmental DNA Metabarcoding to Conventional Surveys for Measuring Fish Species Richness 魚類の種多様性を測るための環境DNAメタバーコーディングを従来調査に適用する McElroy et al.
132 Blind assessment of vertebrate taxonomic diversity across spatial scales by clustering environmental DNA metabarcoding sequences 環境DNAメタバーコーディング配列のクラスタリングによる脊椎動物分類学的多様性の空間スケールでのブラインド評価 Marques et al.
133 Marine water environmental DNA metabarcoding provides a comprehensive fish diversity assessment and reveals spatial patterns in a large oceanic area 海洋水に由来する環境DNAのメタバーコーディングは、魚類の多様性を包括的に評価し、大洋域の空間パターンを明らかにする Fraija-Fernández et al.
134 Accounting for false positive detections in occupancy studies based on environmental DNA: A case study of a threatened freshwater fish (Galaxiella pusilla) 環境DNAに基づく占有調査における誤検出の説明: 絶滅の危機に瀕する淡水魚(Galaxiella pusilla)の事例研究 Tingley et al.
135 Pitfalls during in silico prediction of primer specificity for eDNA surveillance 環境DNAの調査のためのプライマー特異性のIn silicoにおける予測の落とし穴 So et all.
136 Remote, autonomous real-time monitoring of environmental DNA from commercial fish 一般的な魚類の環境DNAの遠隔・自律式リアルタイムモニタリング Hansen et al.
137 An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols 環境DNA研究のための図解マニュアル: 採水ガイドラインと実験プロトコル Minamoto et al.
138 Assessment of stream macroinvertebrate communities with eDNA is not congruent with tissue‐based metabarcoding 環境DNAを用いた河川の大型脊椎動物群集の評価は組織ベースのメタバーコーディングとは一致しない Gleason et al.
139 Lost and found: Frogs in a biodiversity hotspot rediscovered with environmental DNA 失われたものと発見されたもの。生物多様性ホットスポットのカエルを環境DNAで再発見 Lopes et al.
140 Honey as a Source of Environmental DNA for the Detection and Monitoring of Honey Bee Pathogens and Parasites ミツバチの病原体や寄生虫の検出とモニタリングのための環境DNAの供給源としての蜂蜜 Ribani et al.
141 Species detection from aquatic eDNA: Assessing the importance of capture methods 水環境に由来する環境DNAから種の検出: 捕獲法の重要性を評価する Peixoto et al.
142 BarcodingGO: A problem‐based approach to teach concepts related to environmental‐DNA and bioinformatics BarcodingGO: 環境DNAおよびバイオインフォマティクスに関連する概念を教えるための問題提起型のアプローチ Nunes et al.
143 Projection range of eDNA analysis in marshes: a suggestion from the Siberian salamander (Salamandrella keyserlingii) inhabiting the Kushiro marsh, Japan 湿地帯における環境DNA分析の影響範囲: 釧路湿原に生息するシベリアサンショウウオ(Salamandrella keyserlingii)による示唆 Takeshita et al.
144 Application of environmental DNA methods for the detection and abundance estimation of invasive aquatic plant Egeria densa in lotic habitats 侵襲性水生植物(Egeria densa)の検出と生息数推定のための環境DNA法の適用 Miyazono et al.
145 Status of the major aquaculture carps of China in the Laurentian Great Lakes Basin Chapman et al.
146 Designing environmental DNA surveys in complex aquatic systems: Backpack sampling for rare amphibians in Sierra Nevada meadows 複雑な水生システムにおける環境DNA調査の設計: シエラネバダの牧草地における希少両生類のバックパックサンプリング Pope et al.
147 Environmental DNA metabarcoding for biodiversity monitoring of a highly diverse tropical fish community in a coral reef lagoon: Estimation of species richness and detection of habitat segregation サンゴ礁のラグーンにおける多様性の高い熱帯魚群集の生物多様性モニタリングのための環境DNAメタバーコーディング: 種多様性の推定と生息環境の分離の検出 Oka et al.
148 Fine-scale environmental heterogeneity shapes fluvial fish communities as revealed by eDNA metabarcoding 環境DNAメタバーコーディングによる河川魚類群集の微細な環境不均一性の解明 Berger et al.
149 Environmental DNA metabarcoding provides enhanced detection of the European eel Anguilla anguilla and fish community structure in pumped river catchments 環境DNAメタバーコーディングは揚水河川集水域におけるヨーロッパウナギ(Anguilla anguilla)と魚類群集構造の検出を提供する Griffiths et al.
150 Technological advances in biodiversity monitoring: applicability, opportunities and challenges 生物多様性モニタリングの技術的進歩:適用可能性、機会と課題 Stephenson
151 Aquatic suspended particulate matter as source of eDNA for fish metabarcoding 魚類のメタバーコーディングのための環境DNAの供給源としての水生浮遊粒子状物質 Diaz et al.
152 Robotic environmental DNA bio-surveillance of freshwater health 淡水の健康状態のロボテックな環境DNAバイオサーベイランス Sepulveda et al.
153 Environmental DNA is effective in detecting the federally threatened Louisiana Pinesnake (Pituophis ruthveni) 環境DNAは連邦の脅威にさらされているルイジアナ・パインズネーク (Pituophis ruthveni) の検出に効果的である Katz et al.
154 Sensitive environmental DNA detection via lateral flow assay (dipstick)—A case study on corallivorous crown‐of‐thorns sea star (Acanthaster cf. solaris) detection ラテラルフローアッセイ(ディップスティック)による高感度環境DNA検出(Acanthaster cf. solaris)の事例研究 Doytle and Uthicke
155 Thermal stratification and fish thermal preference explain vertical eDNA distributions in lakes 熱成層化と魚類の温度選好性が湖沼における垂直方向の環境DNAの分布を明らかにする Littlefair et al.
156 Space-time dynamics in monitoring neotropical fish communities using eDNA metabarcoding 環境DNAメタバーコーディングを用いた熱帯魚類群集モニタリングにおける時空間的な変動 Sales et al.
157 Environmental DNA metabarcoding reveals the presence of a small, quick-moving, nocturnal water shrew in a forest stream 環境 DNA メタバーコーディングにより明らかになった小型で素早い夜行性哺乳類カワネズミの渓流における生息 Yonezawa et al.
158 Evaluating environmental DNA as a tool for detecting an amphibian pathogen using an optimized extraction method 最適抽出法を用いた両生類病原体検出ツールとしての環境DNAの評価 Brannely et al.
159 Environmental DNA analysis provides an overview of distribution patterns of two dojo loach species within the Naka-ikemi Wetland, Fukui Prefecture, Japan 環境DNA解析により、福井県中池見湿地内の2種のドジョウの分布パターンの概要が明らかになった Okada et al.
160 New eDNA based tool applied to the specific detection and monitoring of the endangered European eel 絶滅の危機に瀕しているヨーロッパウナギの特異的な検出とモニタリングに適用される新しい環境DNAベースのツール Cardas et al.
161 MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples MiFishメタバーコーディング:環境DNAおよびその他のサンプルから複数の魚種を同時に検出するためのハイスループットなアプローチ Miya et al.
162 A comprehensive and comparative evaluation of primers for metabarcoding eDNA from fish 魚類の環境DNAメタバーコーディングのためのプライマーの包括的・比較評価 Zhang et al.
163 How to design optimal eDNA sampling strategies for biomonitoring in river networks 河川ネットワークにおけるバイオモニタリングのための最適な環境DNAサンプリング戦略の設計方法 Carraro et al.
164 Environmental DNA is an effective tool to track recolonizing migratory fish following large‐scale dam removal 環境DNAは大規模なダムの撤去後に回遊魚を追跡するための有効なツールである Duda et al.
165 Using environmental DNA for biomonitoring of freshwater fish communities: Comparison with established gillnet surveys in a boreal hydroelectric impoundment 淡水魚群集のバイオモニタリングに環境DNAを利用: 北極海の水力発電貯水池における確立された刺し網調査との比較 Boivin-Delisle et al.
166 Application of eDNA metabarcoding in a fragmented lowland river: Spatial and methodological comparison of fish species composition 分断された低地河川における環境DNAメタバーコーディングの応用: 魚種組成の空間的・方法論的比較 Antognazza et al.
167 Development and validation of four environmental DNA assays for species of conservation concern in the South-Central United States 米国中南部における保全が懸念される種のための4つの環境DNAアッセイの開発と検証 Siler et al.
168 Comparison of markers for the monitoring of freshwater benthic biodiversity through DNA metabarcoding DNAメタバーコーディングによる淡水底生生物の生物多様性モニタリングのためのマーカーの比較 Ficetola et al.
169 Multi‐species models reveal that eDNA metabarcoding is more sensitive than backpack electrofishing for conducting fish surveys in freshwater streams 多種モデルを用いた環境DNAメタバーコーディングは電気漁法よりも淡水域の魚類調査の感度が高いことを解明 McColl-Gausden et al.
170 Environmental (e)DNA: what’s behind the term? Clarifying the terminology and recommendations for its future use in biomonitoring 環境(e)DNA:用語の背景にあるものとは?用語の明確化と今後のバイオモニタリングでの使用のための推奨事項 Pawlowski et al.
171 Marine biomonitoring with eDNA: can metabarcoding of water samples cut it as a tool for surveying benthic communities? 環境DNAを用いた海洋バイオモニタリング: 水試料のメタバーコーディングは底生生物群集の調査ツールとして利用できるか? Antich et al.
172 Increasing confidence for discerning species and population compositions from metabarcoding assays of environmental samples: case studies of fishes in the Laurentian Great Lakes and Wabash River 環境試料のメタバーコーディングアッセイから種と個体群組成を識別するための信頼性の向上:ローレンシャン五大湖とワバッシュ川の魚類の事例研究 Snyer et al.
173 Certain detection of uncertain taxa: eDNA detection of a cryptic mountain sucker (Pantosteus jordani) in the Upper Missouri River, USA 正確な検出による不明な分類群の検出: アメリカ ミズーリ川上流に生息する Pantosteus jordaniの環境DNAの検出 Mason et al.
174 Integrating species distribution and occupancy modeling to study hellbender (Cryptobranchus alleganiensis) occurrence based on eDNA surveys 環境DNA調査に基づいたヘルベンダー(Cryptobranchus alleganiensis)の生息調査のための種の分布と占有モデルの統合 Da silva Neto et al.
175 Disease in Central Valley Salmon: Status and Lessons from Other Systems セントラルバレーにおけるサケの病気: 他のシステムの現状と教訓 Lehman et al.
176 A non-lethal method for detection of Bonamia ostreae in flat oyster (Ostrea edulis) using environmental DNA 環境DNAによるカキOstrea edulisの寄生虫Bonamia ostreaeの非致死的な検出法 Jorgensen et al.
177 Application of Environmental DNA for Monitoring of Freshwater Fish in Korea 環境DNAの韓国淡水魚モニタリングへの応用 Jeong-Hui et al.
178 Rapid detection of Galba truncatula in water sources on pasture-land using loop-mediated isothermal amplification for control of trematode infections LAMP法を用いた吸虫感染症の制御のための放牧地の水源からGalba truncatulaの迅速的な検出 Davis et al.
179 Assessing the impact of the threatened crucian carp (Carassius carassius) on pond invertebrate diversity ‐ a comparison of conventional and molecular tools 絶滅の危機に瀕しているフナ(Carassius carassius)が池の無脊椎動物の多様性に与える影響の評価-従来のツールと分子ツールの比較 Harper et al.
180 Comparing environmental DNA metabarcoding and underwater visual census to monitor tropical reef fishes 環境DNAメタバーコーディングと水中目視調査の比較による熱帯サンゴ礁魚類のモニタリング Fernández et al.
181 Environmental DNA shedding and decay rates from diverse animal forms and thermal regimes 多様な動物の形態と熱環境からの環境DNAの脱落と崩壊速度 Allan et al.
182 Mitochondrial genomes of Danish vertebrate species generated for the national DNA reference database, DNAmark デンマークの脊椎動物種のミトコンドリアゲノムは、国のDNAリファレンスデータベースであるDNAmarkのために作成された。 Margaryan et al.
183 Sedimentary DNA tracks decadal-centennial changes in fish abundance 堆積DNAは魚類資源の10年ごとの変化を追跡する Kuwae et al.
184 Evaluation of fish biodiversity in estuaries using environmental DNA metabarcoding 環境DNAメタバーコーディングを用いた河口域における魚類の生物多様性の評価 Ahn et al.
185 Comparing fish prey diversity for a critically endangered aquatic mammal in a reserve and the wild using eDNA metabarcoding 環境DNAメタバーコーディングを用いた絶滅危惧種の水生哺乳類の餌生物多様性の野生と保護区の比較 Qu et al.
186 Broad-scale detection of environmental DNA for an invasive macrophyte and the relationship between DNA concentration and coverage in rivers 河川内における侵略的な大型植物の環境DNAの広域的な検出に関するDNA濃度とカバレッジの関係 Doi et al.
187 Population differentiation from environmental DNA: Investigating the potential of haplotype presence/absence‐based analysis of molecular variance 環境DNAからの集団分化:ハプロタイプの有無に基づく分子分散解析の可能性を探る Azarian et al.
188 Using environmental DNA and occupancy modeling to estimate rangewide metapopulation dynamics 環境DNAと占有モデルを用いた広域的なメタ個体群動態の推定 Martel et al.
189 Benthic monitoring of oil and gas offshore platforms in the North Sea using environmental DNA metabarcoding 環境DNAメタバーコーディングを用いた北海石油・ガス洋上プラットフォームの底生モニタリング Mauffrey et al.
190 Exploring a legendary giant squid: an environmental DNA approach 環境DNAによるダイオウイカの探索 Doi et al.
191 Environmental DNA Monitoring: Better Tracking of Endangered, Rare, Cryptic, and Invasive Species 環境DNAモニタリング: 絶滅の危機に瀕している種、希少種、隠ぺい種、侵略種のよりよい追跡法 Ota et al.
192 Fish and crustacean biodiversity in an outer maritime estuary of the Pearl River Delta revealed by environmental DNA 環境DNAによる珠江デルタ外洋河口域における魚類・甲殻類の生物多様性の解明 Cheang et al.
193 Identifying spawning events in fish by observing a spike in environmental DNA concentration after spawning 産卵後の環境DNA濃度の急上昇を観察することで、魚の産卵イベントを特定する Tsuji et al.
194 Allometric scaling of eDNA production in stream‐dwelling brook trout (Salvelinus fontinalis) inferred from population size structure 母集団サイズ構造から推定される渓流域に生息するカワマス(Salvelinus fontinalis)における環境DNA産生のアロメトリック・スケーリング Yates et al.

環境DNA論文サマリーシート(~2019年)

2019年までの環境DNA論文に関するサマリーシートです。さすがに500報を訳すのはしんどいので、こちらには日本語訳がありません。

最終更新: 2020/10/5
情報元: Tsuji et al.2019

No. Title Author Year
1 Species detection using environmental DNA from water samples Ficetola et al. 2008
2 From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments Darling and Mahon 2011
3 Persistence of Environmental DNA in Freshwater Ecosystems Dejean et al. 2011
4 Molecular Detection of Vertebrates in Stream Water: A Demonstration Using Rocky Mountain Tailed Frogs and Idaho Giant Salamanders Goldberg et al. 2011
5 “Sight-unseen” detection of rare aquatic species using environmental DNA Jerde et al. 2011
6 Molecular Detection of Invasive Species in Heterogeneous Mixtures Using a Microfluidic Carbon Nanotube Platform Mahon et al. 2011
7 Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity Andersen et al. 2012
8 The use of molecular tools in invasion biology: an emphasis on freshwater ecosystems Blanchet 2012
9 Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrog Lithobates catesbeianus Dejean et al. 2012
10 Investigating the Potential Use of Environmental DNA (eDNA) for Genetic Monitoring of Marine Mammals Foote et al. 2012
11 Response to Casey et al.’s sensitivity of detecting environmental DNA comment Jerde et al. 2012
12 Conservation in a cup of water: estimating biodiversity and population abundance from environmental DNA Lodge et al. 2012
13 Surveillance of fish species composition using environmental DNA Minamoto et al. 2012
14 An eDNA approach to detect eastern hellbenders (Cryptobranchus a. alleganiensis) using samples of water Olson et al. 2012
15 Next-generation sequencing technologies for environmental DNA research Shokralla et al. 2012
16 Environmental DNA Taberlet et al. 2012
17 Estimation of Fish Biomass Using Environmental DNA Takahara et al. 2012
18 Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples Thomsen et al. 2012
19 Monitoring endangered freshwater biodiversity using environmental DNA Thomsen et al. 2012
20 The future of environmental DNA in ecology Yoccoz 2012
21 Combining species-specific COI primers with environmental DNA analysis for targeted detection of rare freshwater species Bronnenhuber and Wilson 2013
22 Something in the water: biosecurity monitoring of ornamental fish imports using environmental DNA Collins et al. 2013
23 Rapid invasive species detection by combining environmental DNA with Light Transmission Spectroscopy Egan et al. 2013
24 Environmental DNA as a new method for early detection of New Zealand mudsnails (Potamopyrgus antipodarum) Goldberg et al. 2013
25 Detection of Asian carp DNA as part of a Great Lakes basin-wide surveillance program Jerde et al. 2013
26 Validation of eDNA Surveillance Sensitivity for Detection of Asian Carps in Controlled and Field Experiments Mahon et al. 2013
27 Estimating occupancy and abundance of stream amphibians using environmental DNA from filtered water samples Pilliod et al. 2013
28 Noninvasive Method for a Statewide Survey of Eastern Hellbenders Cryptobranchus alleganiensis Using Environmental DNA Santas et al. 2013
29 Using Environmental DNA to Estimate the Distribution of an Invasive Fish Species in Ponds Takahara et al. 2013
30 Robust Detection of Rare Species Using Environmental DNA: The Importance of Primer Specificity Wilcox et al. 2013
31 Environmental Conditions Influence eDNA Persistence in Aquatic Systems Barnes et al. 2014
32 Environmental DNA for wildlife biology and biodiversity monitoring Bohmann et al. 2014
33 Transport Distance of Invertebrate Environmental DNA in a Natural River Deiner and Altermatt 2014
34 History, applications, methodological issues and perspectives for the use of environmental DNA (eDNA) in marine and freshwater environments Díaz-Ferguson and Moyer 2014
35 Development of molecular markers for eDNA detection of the invasive African jewelfish (Hemichromis letourneuxi): a new tool for monitoring aquatic invasive species in National Wildlife Refuges Díaz-Ferguson et al. 2014
36 The Relationship between the Distribution of Common Carp and Their Environmental DNA in a Small Lake Eichmiller et al. 2014
37 Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data Ficetola et al. 2014
38 Distance, flow and PCR inhibition: eDNA dynamics in two headwater streams Jane et al. 2014
39 Using Environmental DNA to Census Marine Fishes in a Large Mesocosm Kelly et al. 2014
40 Detection of invasive freshwater fish species using environmental DNA survey Keskin 2014
41 Utility of environmental DNA for monitoring rare and indicator macroinvertebrate species Mächler et al. 2014
42 Meta-genomic surveillance of invasive species in the bait trade Mahon et al. 2014
43 The Release Rate of Environmental DNA from Juvenile and Adult Fish Maruyama et al. 2014
44 Persistence of DNA in Carcasses, Slime and Avian Feces May Affect Interpretation of Environmental DNA Data Merkes et al. 2014
45 Assessing Environmental DNA Detection in Controlled Lentic Systems Moyer et al. 2014
46 Quantifying Environmental DNA Signals for Aquatic Invasive Species Across Multiple Detection Platforms Nathan et al. 2014
47 The Use of Environmental DNA in Invasive Species Surveillance of the Great Lakes Commercial Bait Trade Nathan et al. 2014
48 Detecting an elusive invasive species: a diagnostic PCR to detect Burmese python in Florida waters and an assessment of persistence of environmental DNA Piaggio et al. 2014
49 Factors influencing detection of eDNA from a stream-dwelling amphibian Pilliod et al. 2014
50 The application of eDNA for monitoring of the Great Crested Newt in the UK Rees et al. 2014
51 The detection of aquatic animal species using environmental DNA – a review of eDNA as a survey tool in ecology Rees et al. 2014
52 Environmental DNA surveillance for invertebrate species: advantages and technical limitations to detect invasive crayfish Procambarus clarkii in freshwater ponds Tréguier et al. 2014
53 Particle size distribution and optimal capture of aqueous macrobial eDNA Turner et al. 2014
54 Improved Methods for Capture, Extraction, and Quantitative Assay of Environmental DNA from Asian Bigheaded Carp (Hypophthalmichthys spp.) Turner et al. 2014
55 Tracking ghosts: combined electrofishing and environmental DNA surveillance efforts for Asian carps in Ontario waters of Lake Erie Wilson et al. 2014
56 Improving efficiency and reliability of environmental DNA analysis for silver carp Amberg et al. 2015
57 Environmental DNA evidence of transfer of North Sea molluscs across tropical waters through ballast water Ardura et al. 2015
58 eDNA and specific primers for early detection of invasive species e A case study on the bivalve Rangia cuneata, currently spreading in Europe Ardura et al. 2015
59 Diverse Applications of Environmental DNA Methods in Parasitology Bass et al. 2015
60 Using eDNA to develop a national citizen science-based monitoring programme for the great crested newt (Triturus cristatus) Biggs et al. 2015
61 Development and Validation of Environmental DNA (eDNA) Markers for Detection of Freshwater Turtles Davy et al. 2015
62 Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA Deiner et al. 2015
63 Droplet Digital Polymerase Chain Reaction (PCR) Outperforms Real-Time PCR in the Detection of Environmental DNA from an Invasive Fish Species Doi et al. 2015
64 Use of Droplet Digital PCR for Estimation of Fish Abundance and Biomass inEnvironmental DNA Surveys Doi et al. 2015
65 Rapid molecular detection of invasive species in ballast and harbor water by integrating environmental DNA and Light Transmission Spectroscopy Egan et al. 2015
66 Mitochondrial Genome Sequencing and Development of Genetic Markers for the Detection of DNA of Invasive Bighead and Silver Carp (Hypophthalmichthys nobilis and H. molitrix) in Environmental Water Samples from the United States Farrington et al. 2015
67 A basin-scale application of environmental DNA assessment for rare endemic species and closely related exotic species in rivers: a case study of giant salamanders in Japan Fukumoto et al. 2015
68 A framework for estimating the sensitivity of eDNA surveys Furlan et al. 2015
69 Moving environmental DNA methods from concept to practice for monitoring aquatic macroorganisms Goldberg et al. 2015
70 An eDNA assay for Irish Petromyzon marinus and Salmo trutta and field validation in running water Gustavson et al. 2015
71 How will the ‘molecular revolution’ contribute to biological recording? Handley et al. 2015
72 Environmental DNA (eDNA) Sampling Improves Occurrence and Detection Estimates of Invasive Burmese Pythons Hunter et al. 2015
73 Development and application of an eDNA method to detect and quantify a pathogenic parasite in aquatic ecosystems Huver et al. 2015
74 Environmental DNA as an effective tool for detection of imperiled fishes Janosik and Johnston 2015
75 Improving confidence in environmental DNA species detection Jerde et al. 2015
76 Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix Klymus et al. 2015
77 A reply to Iversen et al.'s comment “Monitoring of animal abundance by environmental DNA — An increasingly obscure perspective” Klymus et al. 2015
78 Characterizing the distribution of an endangered salmonid using environmental DNA analysis Laramie et al. 2015
79 Characterizing the distribution of an endangered salmonid using environmental DNA analysis Laramie et al. 2015
80 Monitoring of animal abundance by environmental DNA — An increasingly obscure perspective: A reply to Klymus et al., 2015 Lversen et al. 2015
81 The effect of dilution and the use of a post-extraction nucleic acid purification column on the accuracy, precision, and inhibition of environmental DNA samples McKee et al. 2015
82 Techniques for the practical collection of environmental DNA: filter selection, preservation, and extraction Minamoto et al. 2015
83 MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fshes: detection of more than 230subtropical marine species Miya et al. 2015
84 Reconstructing long-term human impacts on plant communities: an ecological approach based on lake sediment DNA Pansu et al. 2015
85 Ancient and modern environmental DNA Pedersen et al. 2015
86 Applications and limitations of measuring environmental DNA as indicators of the presence of aquatic animals Rees et al. 2015
87 The room temperature preservation of filtered environmental DNA samples and assimilation into a phenol–chloroform–isoamyl alcohol DNA extraction Renshaw et al. 2015
88 Drinking water as a source of environmental DNA for the detection of terrestrial wildlife species Rodgers and Mock 2015
89 The downside of eDNA as a survey tool in water bodies Roussel et al. 2015
90 Modeling the Sensitivity of Field Surveys for Detection of Environmental DNA (eDNA) Schultz and Lance 2015
91 Development of species-specific environmental DNA (eDNA) markers for invasive aquatic plants Scriver et al. 2015
92 Monitoring the near-extinct European weather loach in Denmark based on environmental DNA from water samples Sigsgaard et al. 2015
93 Active and passive environmental DNA surveillance of aquatic invasive species Simmons et al. 2015
94 Environmental DNA sampling is more sensitive than a traditional survey technique for detecting an aquatic invader Smart et al. 2015
95 Using environmental DNA methods to improve detectability in a hellbender (Cryptobranchus alleganiensis) monitoring program Spear et al. 2015
96 Quantifying effects of UV-B, temperature, and pH on eDNA degradation in aquatic microcosms Strickler et al. 2015
97 Effects of sample processing on the detection rate of environmental DNA from the Common Carp (Cyprinus carpio) Takahara et al. 2015
98 Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity Thomsen et al. 2015
99 Fish environmental DNA is more concentrated in aquatic sediments than surface water Turner et al. 2015
100 Long duration, room temperature preservation of filtered eDNA samples Wegleitner et al. 2015
101 Environmental DNA particle size distribution from Brook Trout (Salvelinus fontinalis) Wilcox et al. 2015
102 The Dual Challenges of Generality and Specificity When Developing Environmental DNA Markers for Species and Subspecies of Oncorhynchus Wilcox et al. 2015
103 An eDNA Assay to Monitor a Globally Invasive Fish Species from Flowing Freshwater Adrian-Kalchhauser and Burkhardt-Holm 2016
104 The ecology of environmental DNA and implications for conservation genetics Barnes and Turner 2016
105 Detection of Adult Green Sturgeon Using Environmental DNA Analysis Bergman et al. 2016
106 Environmental DNA (eDNA) detection and habitat occupancy of threatened spotted gar (Lepisosteus oculatus) Boothroyd et al. 2016
107 A primer for use of genetic tools in selecting and testing the suitability of set-aside sites protected from deep-sea seafloor massive sulfide mining activities Boschen et al. 2016
108 Metabarcoding of marine zooplankton: prospects, progress and pitfalls Bucklin et al. 2016
109 Improving the containment of a freshwater invader using environmental DNA (eDNA) based monitoring Bylemans et al. 2016
110 In silico assessment of primers for eDNA studies using PrimerTree and application to characterize the biodiversity surrounding the Cuyahoga River Cannon et al. 2016
111 Environmental DNA Marker Development with Sparse Biological Information: A Case Study on Opossum Shrimp (Mysis diluviana) Carim et al. 2016
112 An environmental DNA assay for detecting Arctic grayling in the upper Missouri River basin, North America Carim et al. 2016
113 An environmental DNA marker for detecting nonnative brown trout (Salmo trutta) Carim et al. 2016
114 Development of species-specific primers with potential for amplifying eDNA from imperilled freshwater unionid mussels Cho et al. 2016
115 Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System Civade et al. 2016
116 An Easy Phylogenetically Informative Method to Trace the Globally Invasive Potamopyrgus Mud Snail from River’s eDNA Clusa et al. 2016
117 Laboratory and field validation of a simple method for detecting four species of non-native freshwater fish using eDNA Davison et al. 2016
118 Detection and characterisation of the biopollutant Xenostrobus securis (Lamarck 1819) Asturian population from DNA Barcoding and eBarcoding Devloo-Delva et al. 2016
119 Environmental DNA for Detection of Endangered Grouper Species (Epinephelus spp.) Doğdu and Turan 2016
120 Environmental DNA analysis for estimating the abundance and biomass of stream fish Doi et al. 2016
121 Environmental DNA (eDNA) detects the invasive rusty crayfish Orconectes rusticus at low abundances Dougherty et al. 2016
122 Potential of EnvironmentalDNA to Evaluate Northern Pike (Esox lucius) Eradication Efforts: An Experimental Test and Case Study Dunker et al. 2016
123 Quantitative PCR Assays for Detecting Loach Minnow (Rhinichthys cobitis) and Spikedace (Meda fulgida) in the Southwestern United States Dysthe et al. 2016
124 Optimizing techniques to capture and extract environmental DNA for detection and quantification of fish Eichmiller et al. 2016
125 Effects of temperature and trophic state on degradation of environmental DNA in lake water Eichmiller et al. 2016
126 Detecting the movement and spawning activity of bigheaded carps with environmental DNA Erickson et al. 2016
127 Trails of river monsters: Detecting critically endangered Mekong giant catfish Pangasianodon gigas using environmental DNA Eva et al. 2016
128 Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding Evans et al. 2016
129 Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers Fahner et al. 2016
130 How to limit false positives in environmental DNA and metabarcoding? Ficetola et al. 2016
131 Can environmental DNA (eDNA) be used for detection and monitoring of introduced crab species in the Baltic Sea? Forsström and Vasemägi 2016
132 The importance of molecular markers and primer design when characterizing biodiversity from environmental DNA (eDNA) Freeland 2016
133 Use of environmental DNA to survey the distribution of an invasive submerged plant in ponds Fujiwara et al. 2016
134 Environmental DNA detection of redfin perch, Perca fluviatilis Furlan and Gleeson 2016
135 Detection and identification of lampreys in Great Lakes streams using environmental DNA Gingera et al. 2016
136 Critical considerations for the application of environmental DNA methods to detect aquatic species Goldberg et al. 2016
137 Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods Hänfling et al. 2016
138 Aquatic biodiversity assessment for the lazy Hoffmann et al. 2016
139 Using environmental DNA to detect an endangered crayfish Cambaroides japonicus in streams Ikeda et al. 2016
140 The influence of stream bottom substrate on the retention and transport of vertebrate environmental DNA Jerde et al. 2016
141 Making environmental DNA count Kelly 2016
142 Genetic signatures of ecological diversity along an urbanization gradient Kelly et al. 2016
143 Detection of rare and invasive freshwater fish species using eDNA pyrosequencing: Lake Iznik ichthyofauna revised Keskin et al. 2016
144 Quantifying relative fish abundance with eDNA: a promising tool for fisheries management Lacoursière-Roussel et al. 2016
145 Estimating fish abundance and biomass from eDNA concentrations: variability among capture methods and environmental conditions Lacoursière-Roussel et al. 2016
146 Statistical approaches to account for false-positive errors in environmental DNA samples Lahoz-Monfort et al. 2016
147 Characterization, optimization, and validation of environmental DNA (eDNA) markers to detect an endangered aquatic mammal Ma et al. 2016
148 Fishing in the Water: Effect of Sampled Water Volume on Environmental DNA-Based Detection of Macroinvertebrates Mächler et al. 2016
149 Evaluation of the Environmental DNA Method for Estimating Distribution and Biomass of Submerged Aquatic Plants Matsuhashi et al. 2016
150 Sampling large geographic areas for rare species using environmental DNA: a study of bull trout Salvelinus confluentus occupancy in western Montana Mckelvey et al. 2016
151 Controlling populations of invasive pygmy mussel (Xenostrobus securis) through citizen science and environmental DNA Miralles et al. 2016
152 Use of a Filter Cartridge for Filtration of Water Samples and Extraction of Environmental DNA Miya et al. 2016
153 Estimating species richness using environmental DNA Olds et al. 2016
154 An eDNA assay for river otter detection: a tool for surveying a semi-aquatic mammal Padgett-Stewart et al. 2016
155 Saving the doomed: Using eDNA to aid in detection of rare sturgeon for conservation (Acipenseridae) Pfleger et al. 2016
156 Evaluating the effects of laboratory protocols on eDNA detection probability for an endangered freshwater fish Piggott 2016
157 Assessing Vertebrate Biodiversity in a Kelp Forest Ecosystem using Environmental DNA Port et al. 2016
158 Fine tuning for the tropics: application of eDNA technology for invasive fish detection in tropical freshwater ecosystems Robson et al. 2016
159 Improving herpetological surveys in eastern North America using the environmental DNA method Roussel et al. 2016
160 Quantification of environmental DNA (eDNA) shedding and decay rates for three marine fish Sassoubre et al. 2016
161 Using occupancy modelling to compare environmental DNA to traditional field methods for regional-scale monitoring of an endangered aquatic species Schmelzle and Inziger 2016
162 Detection of Invasive Mosquito Vectors Using Environmental DNA (eDNA) from Water Samples Schneider et al. 2016
163 Detection of a global aquatic invasive amphibian, Xenopus laevis, using environmental DNA Secondi et al. 2016
164 Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system Shaw et al. 2016
165 A framework for inferring biological communities from environmental DNA Shelton et al. 2016
166 Modelling the transport of environmental DNA through a porous substrate using continuous flow-through column experiments Shogren et al. 2016
167 Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA Sigsgaard et al. 2016
168 Environmental DNA detects Critically Endangered largetooth sawfish in the wild Simpfendorfer et al. 2016
169 Worldwide analysis of sedimentary DNA reveals major gaps in taxonomic knowledge of deep-sea benthos Sinniger et al. 2016
170 Assessing the cost-efficiency of environmental DNA sampling Smart et al. 2016
171 Inferring neutral biodiversity parameters using environmental DNA data sets Sommeria-Klein et al. 2016
172 Environmental DNA (eDNA) Detection Probability Is Influenced by Seasonal Activity of Organisms Souza et al. 2016
173 Comparison of capture and storage methods for aqueous macrobial eDNA using an optimized extraction protocol: advantage of enclosed filter Spens et al. 2016
174 Environmental DNA as a monitoring tool for the endangered freshwater pearl mussel (Margaritifera margaritifera L.): a substitute for classical monitoring approaches? Stoeckle et al. 2016
175 Emerging Technologies to Conserve Biodiversity: Further Opportunities via Genomics. Response to Pimm et al. Taylor et al. 2016
176 Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes Thomsen et al. 2016
177 Effects of water pH and proteinase K treatment on the yield of environmental DNA from water samples Tsuji et al. 2016
178 A sensitive environmental DNA (eDNA) assay leads to new insights on Ruffe (Gymnocephalus cernua) spread in North America Tucker et al. 2016
179 A novel environmental DNA approach to quantify the cryptic invasion of non-native genotypes Uchii et al. 2016
180 Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding Valentini et al. 2016
181 Implementation of Novel Design Features for qPCR-Based eDNA Assessment Veldhoen et al. 2016
182 Freshwater vertebrate metabarcoding on Illumina platforms using double-indexed primers of the mitochondrial 16S rRNA gene Vences et al. 2016
183 Understanding environmental DNA detection probabilities: A case study using a stream-dwelling char Salvelinus fontinalis Wilcox et al. 2016
184 No filter, no fridges: a method for preservation of water samples for eDNA analysis Williams et al. 2016
185 The importance of including imperfect detection models in eDNA experimental design Willoughby et al. 2016
186 Recognizing false positives: synthetic oligonucleotide controls for environmental DNA surveillance Wilson et al. 2016
187 Environmental DNA as a ‘Snapshot’ of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan Yamamoto et al. 2016
188 The use of environmental DNA of fishes as an efficient method of determining habitat connectivity Yamanaka and Minamoto 2016
189 On-site filtration of water samples for environmental DNA analysis to avoid DNA degradation during transportation Yamanaka et al. 2016
190 Monitoring of noble, signal and narrowclawed crayfish using environmental DNA from freshwater samples Agersnap et al. 2017
191 Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding Andruszkiewicz et al. 2017
192 Persistence of marine fish environmental DNA and the influence of sunlight Andruszkiewicz et al. 2017
193 Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact Bakker et al. 2017
194 Residual eDNA detection sensitivity assessed by quantitative real-time PCR in a river ecosystem Balasingham et al. 2017
195 Efficacy of Environmental DNA to Detect and Quantify Brook Trout Populations in Headwater Streams of the Adirondack Mountains, New York Baldigo et al. 2017
196 Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity Bista et al. 2017
197 Detection of a new non-native freshwater species by DNA metabarcoding of environmental samples – first record of Gammarus fossarum in the UK Blackman et al. 2017
198 DNA in a bottle—Rapid metabarcoding survey for early alerts of invasive species in ports Borrell et al. 2017
199 Development and Application of an eDNA Method to Detect the Critically Endangered Trinidad Golden Tree Frog (Phytotriades auratus) in Bromeliad Phytotelmata Brozio et al. 2017
200 Is the detection of aquatic environmental DNA influenced by substrate type? Buxton et al. 2017
201 Seasonal variation in environmental DNA in relation to population size and environmental factors Buxton et al. 2017
202 An environmental DNA-based method for monitoring spawning activity: a case study, using the endangered Macquarie perch (Macquaria australasica) Bylemans et al. 2017
203 Using eDNA to Detect the Distribution and Density of Invasive Crayfish in the Honghe-Hani Rice Terrace World Heritage Site Cai et al. 2017
204 A Noninvasive Tool to Assess the Distribution of Pacific Lamprey (Entosphenus tridentatus) in the Columbia River Basin Carim et al. 2017
205 A qPCR MGB probe based eDNA assay for European freshwater pearl mussel (Margaritifera margaritifera L.) Carlsson et al. 2017
206 eDNA for detection of five highly invasive molluscs. A case study in urban rivers from the Iberian Peninsula Clusa et al. 2017
207 An extremely sensitive nested PCR-RFLP mitochondrial marker for detection and identification of salmonids in eDNA from water samples Clusa et al. 2017
208 Predicting the ecological quality status of marine environments from eDNA metabarcoding data using supervised machine learning Cordier et al. 2017
209 Application of environmental DNA analysis to inform invasive fish eradication operations Davison et al. 2017
210 Environmental DNA metabarcoding: Transforming how we survey animal and plant communities Deiner et al. 2017
211 Long-range PCR allows sequencing of mitochondrial genomes from environmental DNA Deiner et al. 2017
212 Evaluation of Filtration and DNA Extraction Methods for Environmental DNA Biodiversity Assessments across Multiple Trophic Levels Djurhuus et al. 2017
213 Detection of an endangered aquatic heteropteran using environmental DNA in a wetland ecosystem Doi et al. 2017
214 Isopropanol precipitation method for collecting fish environmental DNA Doi et al. 2017
215 Water sampling for environmental DNA surveys by using an unmanned aerial vehicle Doi et al. 2017
216 Behavior and season affect crayfish detection and density inference using environmental DNA Dunn et al. 2017
217 Environmental DNA assays for the sister taxa sauger (Sander canadensis) and walleye (Sander vitreus) Dysthe et al. 2017
218 Seasonal trends in eDNA detection and occupancy of bigheaded carps Erickson et al. 2017
219 Fish community assessment with eDNA metabarcoding: effects of sampling design and bioinformatic filtering Evans et al. 2017
220 Comparative Cost and Effort of Fish Distribution Detection via Environmental DNA Analysis and Electrofishing Evans et al. 2017
221 Improving reliability in environmental DNA detection surveys through enhanced quality control Furlan and Gleeson 2017
222 Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: a case study of devil ray at seamounts Gargan et al. 2017
223 qPCR Detection of Early Life History Stage Chrysaora quinquecirrha (Sea Nettles) in Barnegat Bay, New Jersey Gaynor et al. 2017
224 Management of invasive species in inland waters: technology development and international cooperation Gingera et al. 2017
225 Use of environmental DNA (eDNA) and water quality data to predict protozoan parasites outbreaks in fish farms Gomes et al. 2017
226 Environmental DNA in subterranean biology: range extension and taxonomic implications for Proteus Gorički et al. 2017
227 Dealing with false positive and false negative errors about species occurrence at multiple levels Guillera-Arroita et al. 2017
228 Application of environmental DNA analysis for the detection of Opisthorchis viverrini DNA in water samples Hashizume et al. 2017
229 Environmental DNA monitoring and management of invasive fish: comparison of eDNA and fyke netting Hinlo et al. 2017
230 Methods to maximise recovery of environmental DNA from water samples Hinlo et al. 2017
231 Detection limits of quantitative and digital PCR assays and their influence in presence-absence surveys of environmental DNA Hunter et al. 2017
232 Tropical-forest mammals as detected by environmental DNA at natural saltlicks in Borneo Ishige et al. 2017
233 Rapid degradation of longer DNA fragments enables the improved estimation of distribution and biomass using environmental DNA Jo et al. 2017
234 Environmental DNA method for estimating salamander distribution in headwater streams, and a comparison of water sampling methods Katano et al. 2017
235 Genetic and Manual Survey Methods Yield Different and Complementary Views of an Ecosystem Kelly et al. 2017
236 At the forefront: evidence of the applicability of using environmental DNA to quantify the abundance of fish populations in natural lentic waters with additional sampling considerations Klobucar et al. 2017
237 Metabarcoding of Environmental DNA Samples to Explore the Use of Uranium Mine Containment Ponds as a Water Source for Wildlife Klymus et al. 2017
238 Environmental DNA (eDNA) metabarcoding assays to detect invasive invertebrate species in the Great Lakes Klymus et al. 2017
239 Experimental observations on the decay of environmental DNA from bighead and silver carps Lance et al. 2017
240 Environmental DNA (eDNA) detects the invasive crayfishes Orconectes rusticus and Pacifastacus leniusculus in large lakes of North America Larson et al. 2017
241 DNA amplification in the field: move over PCR, here comes LAMP Lee et al. 2017
242 eDNA metabarcoding: a promising method for anuran surveys in highly diverse tropical forests Lopes et al. 2017
243 A framework for developing and validating taxon‐specific primers for specimen identification from environmental DNA MacDonald and Sarre 2017
244 A Rapid‐Assessment Method to Estimate the Distribution of Juvenile Chinook Salmon in Tributary Habitats Using eDNA and Occupancy Estimation Matter et al. 2017
245 On the way for detecting and quantifying elusive species in the sea: The Octopus vulgaris case study Mauvisseau et al. 2017
246 Environmental DNA reflects spatial and temporal jellyfish distribution Minamoto et al. 2017
247 Nuclear internal transcribed spacer-1 as a sensitive genetic marker for environmental DNA studies in common carp Cyprinus carpio Minamoto et al. 2017
248 Establishing an environmental DNA method to detect and estimate the biomass of Sakhalin taimen, a critically endangered Asian salmonid Mizumoto et al. 2017
249 Using Environmental DNA to Improve Species Distribution Models for Freshwater Invaders Muha et al. 2017
250 Spatial distribution of environmental DNA in a nearshore marine habitat O’Donnell et al. 2017
251 Comparison of American Fisheries Society (AFS) Standard Fish Sampling Techniques and Environmental DNA for Characterizing Fish Communities in a Large Reservoir Perez et al. 2017
252 An environmental DNA assay for detecting Macquarie perch, Macquaria australasica Piggott 2017
253 Decline of a giant salamander assessed with historical records, environmental DNA and multi‐scale habitat data Pitt et al. 2017
254 Wanted dead or alive? Using metabarcoding of environmental DNA and RNA to distinguish living assemblages for biosecurity applications Pochon et al. 2017
255 The detection of great crested newts year round via environmental DNA analysis Rees et al. 2017
256 Living quarters of a living fossil - Uncovering the current distribution pattern of the rediscovered Hula painted frog (Latonia nigriventer) using environmental DNA Renan et al. 2017
257 Identifying a breeding habitat of a critically endangered fish, Acheilognathus typus, in a natural river in Japan Sakata et al. 2017
258 Environmental DNA (eDNA) Shedding and Decay Rates to Model Freshwater Mussel eDNA Transport in a River Sansom et al. 2017
259 Environmental DNA characterization of amphibian communities in the Brazilian Atlantic forest: Potential application for conservation of a rich and threatened fauna Sasso et al. 2017
260 Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fsh communities Sato et al. 2017
261 Controls on eDNA movement in streams: Transport, Retention, and Resuspension Shogren et al. 2017
262 Seawater environmental DNA refects seasonality of a coastal fsh community Sigsgaard et al. 2017
263 Making sense of the noise: The effect of hydrology on silver carp eDNA detection in the Chicago area waterway system Song et al. 2017
264 Development, validation, and evaluation of an assay for the detection of wood frogs (Rana sylvatica) in environmental DNA Spangler et al. 2017
265 Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment Stat et al. 2017
266 Using environmental DNA to assess population-wide spatiotemporal reserve use Stewart et al. 2017
267 A systematic approach to evaluate the influence of environmental conditions on eDNA detection success in aquatic ecosystems Stoeckle et al. 2017
268 Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary Stoeckle et al. 2017
269 Exploring the Use of Environmental DNA to Determine the Species of Salmon Redds Strobel et al. 2017
270 Seasonal and diel signature of eastern hellbender environmental DNA Takahashi et al. 2017
271 Environmental DNA Detection of the Golden Tree Frog (Phytotriades auratus) in Bromeliads Torresdal et al. 2017
272 Water temperature-dependent degradation of environmental DNA and its relation to bacterial abundance Tsuji et al. 2017
273 Distinct seasonal migration patterns of Japanese native and non-native genotypes of common carp estimated by environmental DNA Uchii et al. 2017
274 Comparing Efficiency of American Fisheries Society Standard Snorkeling Techniques to Environmental DNA Sampling Techniques Ulibarri et al. 2017
275 Environmental DNA enables detection of terrestrial mammals from forest pond water Ushio et al. 2017
276 Tracing the quagga mussel invasion along the Rhine river system using eDNA markers: early detection and surveillance of invasive zebra and quagga mussels Ventura et al. 2017
277 Using DNA metabarcoding to investigate honey bee foraging reveals limited flower use despite high floral availability Vere et al. 2017
278 Surveying Europe’s Only Cave-Dwelling Chordate Species (Proteus anguinus) Using Environmental DNA Vörös et al. 2017
279 Methodological considerations for detection of terrestrial small-body salamander eDNA and implications for biodiversity conservation Walker et al. 2017
280 Application of environmental DNA to detect an endangered marine skate species in the wild Weltz et al. 2017
281 Isothermal amplification of environmental DNA (eDNA) for direct field-based monitoring and laboratory confirmation of Dreissena sp. Williams et al. 2017
282 Clearing muddied waters: Capture of environmental DNA from turbid waters Williams et al. 2017
283 Quantitative PCR multiplexes for simultaneous multispecies detection of Asian carp eDNA Wozney et al. 2017
284 Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea Yamamoto et al. 2017
285 A simple method for preserving environmental DNA in water samples at ambient temperature by addition of cationic surfactant Yamanaka et al. 2017
286 Plant DNA metabarcoding of lake sediments: How does it represent the contemporary vegetation Alsos et al. 2018
287 The Importance of Sound Methodology in Environmental DNA Sampling: Response to Comment Amberg et al. 2018
288 PCR-based assay for Mya arenaria detection from marine environmental samples and tracking its invasion in coastal ecosystems Ardura et al. 2018
289 An environmental DNA sampling method for aye-ayes from their feeding traces Aylward et al. 2018
290 Evaluation of environmental DNA to detect Sistrurus catenatus and Ophidiomyces ophiodiicola in crayfish burrows Baker et al. 2018
291 Environmental DNA (eDNA) From the Wake of the Whales: Droplet Digital PCR for Detection and Species Identification Baker et al. 2018
292 Environmental DNA detection of rare and invasive fish species in two Great Lakes tributaries Balasingham et al. 2018
293 Environmental DNA Time Series in Ecology Bálint et al. 2018
294 Accuracy, limitations and cost efficiency of eDNA‐based community survey in tropical frogs Bálint et al. 2018
295 Core Concept: Environmental DNA helps researchers track pythons and other stealthy creatures Beans 2018
296 Development of quantitative PCR primers and probes for environmental DNA detection of amphibians in Ontario Beauclerc et al. 2018
297 Metabarcoding and post-sampling strategies to discover non-indigenous species: A case study in the estuaries of the central south Bay of Biscay Borrell et al. 2018
298 Environmental DNA illuminates the dark diversity of sharks Boussarie et al. 2018
299 Shotgun metagenomics of honey DNA: Evaluation of a methodological approach to describe a multi-kingdom honey bee derived environmental DNA signature Bovo et al. 2018
300 Seasonal variation in environmental DNA detection in sediment and water samples Buxton et al. 2018
301 Comparison of Two Citizen Scientist Methods for Collecting Pond Water Samples for Environmental DNA Studies Buxton et al. 2018
302 Toward an ecoregion scale evaluation of eDNA metabarcoding primers: A case study for the freshwater fish biodiversity of the Murray–Darling Basin (Australia) Bylemans et al. 2018
303 Does size matter? An experimental evaluation of the relative abundance and decay rates of aquatic eDNA Bylemans et al. 2018
304 Monitoring riverine fish communities through eDNA metabarcoding: determining optimal sampling strategies along an altitudinal and biodiversity gradient Bylemans et al. 2018
305 Estimating species distribution and abundance in river networks using environmental DNA Carraro et al. 2018
306 A fate and transport model for Asian carp environmental DNA in the Chicago area waterways system Cerco et al. 2018
307 An analytical framework for estimating aquatic species density from environmental DNA Chambert et al. 2018
308 Conditionally autoregressive models improve occupancy analyses of autocorrelated data: an example with environmental DNA Chen and Ficetola 2018
309 Unlocking biodiversity and conservation studies in high diversity environments using environmental DNA (eDNA): a test with Guianese freshwater fishes Cilleros et al. 2018
310 Persistence of environmental DNA in marine systems Collins et al. 2018
311 Environmental DNA (eDNA) applications for the conservation of imperiled crayfish (Decapoda: Astacidea) through monitoring of invasive species barriers and relocated populations Cowart et al. 2018
312 Development and field validation of an environmental DNA (eDNA) assay for invasive clams of the genus Corbicula Cowart et al. 2018
313 Metagenomic sequencing of environmental DNA reveals marine faunal assemblages from the West Antarctic Peninsula Cowart et al. 2018
314 Uses and Misuses of Environmental DNA in Biodiversity Science and Conservation Cristescu and Hebert 2018
315 Validation of environmental DNA (eDNA) as a detection tool for at‐risk freshwater pearly mussel species (Bivalvia: Unionidae) Currier et al. 2018
316 Accounting for observation processes across multiple levels of uncertainty improves inference of species distributions and guides adaptive sampling of environmental DNA Davis et al. 2018
317 Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: the effects of filter material, and extraction method Deiner et al. 2018
318 Towards robust and repeatable sampling methods in eDNA based studies Dickie et al. 2018
319 eDNAoccupancy: An R Package for Multi-scale Occupancy Modeling of Environmental DNA Data Dorazio et al. 2018
320 Repurposing environmental DNA samples—detecting the western pearlshell (Margaritifera falcata) as a proof of concept Dysthe et al. 2018
321 An improved environmental DNA assay for bull trout (Salvelinus confluentus) based on the ribosomal internal transcribed spacer I Dysthe et al. 2018
322 Environmental DNA (eDNA) detects the pool frog (Pelophylax
lessonae) at times when traditional monitoring methods are insensitive
Eiler et al. 2018
323 Freshwater fisheries assessment using environmental DNA: A primer on the method, its potential, and shortcomings as a conservation tool Evans et al. 2018
324 Exploring deep-water coral communities using environmental DNA Everett and Park 2018
325 Environmental DNA for freshwater fish monitoring: insights for conservation within a protected area Fernandez et al. 2018
326 Evaluating freshwater macroinvertebrates from eDNA metabarcoding: A river Nalo ́n case study Fernández et al. 2018
327 DNA from lake sediments reveals long-term ecosystem changes after a biological invasion Ficetola et al. 2018
328 “Pitfalls in relative abundance estimation using eDNA metabarcoding” Fonseca 2018
329 Inferring presence of the western toad (Anaxyrus boreas) species complex using environmental DNA Franklin et al. 2018
330 A Non-Invasive Sampling Method for Detecting Non-Native Smallmouth Bass (Micropterus dolomieu) Franklin et al. 2018
331 Environmental DNA detection of aquatic invasive plants in lab mesocosm and natural field conditions Gantz et al. 2018
332 A search for standardized protocols to detect alien invasive crayfish based on environmental DNA (eDNA): A lab and field evaluation Geerts et al. 2018
333 Attracting Common Carp to a bait site with food reveals strong positive relationships between fish density, feeding activity, environmental DNA, and sex pheromone release that could be used in invasive fish management Ghosal et al. 2018
334 Degradation and dispersion limit environmental DNA detection of rare amphibians in wetlands: Increasing efficacy of sampling designs. Goldberg et al. 2018
335 Efects of sampling efort on biodiversity patterns estimated from environmental DNA metabarcoding surveys Grey et al. 2018
336 Metabarcoding of marine environmental DNA based on mitochondrial and nuclear genes Günther et al. 2018
337 Occurrence of California Red-Legged (Rana draytonii) and Northern Red-Legged (Rana aurora) Frogs in Timberlands of Mendocino County, California, Examined with Environmental DNA Halstead et al. 2018
338 Quantitative real-time polymerase chain reaction (PCR) and droplet digital PCR duplex assays for detecting Zostera marina DNA in coastal sediments
digital PCR duplex assays for detecting Zostera marina DNA in coastal
sediments
Hamaguchi et al. 2018
339 The sceptical optimist: challenges and perspectives for the application of environmental DNA in marine fisheries Hansen et al. 2018
340 Development and application of environmental DNA surveillance for the threatened crucian carp (Carassius carassius) Haper et al. 2018
341 Searching for a signal: Environmental DNA (eDNA) for the detection of invasive signal crayfish, Pacifastacus leniusculus (Dana, 1852) Harper et al. 2018
342 Needle in a haystack? A comparison of eDNA metabarcoding and targeted qPCR for detection of the great crested newt (Triturus cristatus) Harper et al. 2018
343 Prospects and challenges of environmental DNA (eDNA) monitoring in freshwater ponds Harper et al. 2018
344 Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive Hering et al. 2018
345 Performance of eDNA assays to detect and quantify an elusive benthic fish in upland streams Hinlo et al. 2018
346 Improving the yield of environmental DNA from filtered aquatic samples Hundermark and Takahashi 2018
347 Surveys of environmental DNA (eDNA): a new approach to estimate occurrence in Vulnerable manatee populations Hunter et al. 2018
348 Detection of Galba truncatula, Fasciola hepatica and Calicophoron daubneyi environmental DNA within water sources on pasture land, a future tool for fluke control? Jones et al. 2018
349 Environmental DNA quantifcation in a spatial and temporal context: a case study examining the removal of brook trout from a high alpine basin Kamorof and Goldberg 2018
350 An issue of life or death: using eDNA to detect viable individuals in wilderness restoration Kamoroff et al. 2018
351 Early detection of marine invasive species, Bugula neritina (Bryozoa: Cheilostomatida), using species-specific primers and environmental DNA analysis in Korea. Kim et al. 2018
352 Environmental DNA as a new tool for assessing the biodiversity of Lake Baikal Kirilchik 2018
353 Environmental DNA metabarcoding studies are critically affected by substrate selection Koziol et al. 2018
354 Finding the pond through the weeds: eDNA reveals underestimated diversity of pondweeds Kuzmina et al. 2018
355 Ethanol and sodium acetate as a preservation method to delay degradation of environmental DNA Ladell et al. 2018
356 Detecting Southern California’s White Sharks With Environmental DNA Lafferty et al. 2018
357 Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples Lear et al. 2018
358 Application of Environmental DNA Metabarcoding for Predicting Anthropogenic Pollution in Rivers Li et al. 2018
359 Estimating fish alpha- and beta-diversity along a small stream with environmental DNA metabarcoding Li et al. 2018
360 The effect of filtration method on the efficiency of environmental DNA capture and quantification via metabarcoding Li et al. 2018
361 Next-generation freshwater bioassessment: eDNA metabarcoding with a conserved metazoan primer reveals species-rich and reservoir-specific communities Lim et al. 2018
362 Optimal survey designs for environmental DNA sampling Lugg et al. 2018
363 Comparison of environmental DNA and bulk-sample metabarcoding using highly degenerate COI primers Macher et al. 2018
364 Shedding light on eDNA: neither natural levels of UV radiation nor the presence of a filter feeder affect eDNA-based detection of aquatic organisms Mächler et al. 2018
365 Choice of DNA extraction method affects DNA metabarcoding of unsorted invertebrate bulk samples Majaneva et al. 2018
366 Environmental DNA fltration techniques afect recovered biodiversit Majaneva et al. 2018
367 Environmental DNA analysis as a non‐invasive quantitative tool for reproductive migration of a threatened endemic fish in rivers Maruyama et al. 2018
368 qPCR detection of Sturgeon chub (Macrhybopsis gelida) DNA in environmental samples Mason et al. 2018
369 Environmental DNA as an efficient tool for detecting invasive crayfishes in freshwater ponds Mauvisseau et al. 2018
370 Using redundant primer sets to detect multiple native Alaskan fish species from environmental DNA Mennig et al. 2018
371 Comparing local- and regional-scale estimations of the diversity of stream fish using eDNA metabarcoding and conventional observation methods Nakagawa et al. 2018
372 Environmental DNA (eDNA): A tool for quantifying the abundant but elusive round goby (Neogobius melanostomus) Nevers et al. 2018
373 Evaluation of eDNA for groundwater invertebrate detection and monitoring: a case study with endangered Stygobromus (Amphipoda: Crangonyctidae) Niemiller et al. 2018
374 Simulating the advection and degradation of the environmental DNA of common carp along a river Nukazawa et al. 2018
375 Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus×yedoensis ‘Somei-yoshino’ across the Japanese archipelago Ohta et al. 2018
376 Distribution and seasonal differences in Pacific Lamprey and Lampetra spp eDNA across 18 Puget Sound watersheds Ostberg et al. 2018
377 Citizen warnings and post checkout molecular confirmations using eDNA as a combined strategy for updating invasive species distributions Parrondo et al. 2018
378 Water, water everywhere: environmental DNA can unlock population structure in elusive marine species Parsons et al. 2018
379 The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems Pawlowski et al. 2018
380 Environmental DNA: A New Low-Cost Monitoring Tool for Pathogens in Salmonid Aquaculture Peters et al. 2018
381 Environmental DNA analysis of river herring in Chesapeake Bay: A powerful tool for monitoring threatened keystone species Plough et al. 2018
382 Environmental DNA reveals quantitative patterns of fsh biodiversity in large rivers despite its downstream transportation Pont et al. 2018
383 Detection of elusive fire salamander larvae (Salamandra salamandra) in streams via environmental DNA Preißler et al. 2018
384 Effects of bioturbation on environmental DNA migration through soil media Prosser and Hedgpeth 2018
385 Detection of the European pond turtle (Emys orbicularis) by environmental DNA: is eDNA adequate for reptiles? Raemy et al. 2018
386 DNA-based monitoring of the alien invasive North American crayfish Procambarus clarkii in Andean lakes (Ecuador) Riascos et al. 2018
387 An environmental DNA assay for the detection of the regionally endangered freshwater fish Alburnoides bipunctatus in Germany Riaz et al. 2018
388 Environmental DNA detects a rare large river crayfish but with little relation to local abundance Rice et al. 2018
389 Quantitative PCR assays for detection of five arctic fish species: Lota lota, Cottus cognatus, Salvelinus alpinus, Salvelinus malma, and Thymallus arcticus from environmental DNA Rodgers et al. 2018
390 Monitoring post-release survival of the northern corroboree frog, Pseudophryne pengilleyi, using environmental DNA Rojahn et al. 2018
391 eDNA metabarcoding as a new surveillance approach for coastal Arctic biodiversity Roussel et al. 2018
392 Development of environmental DNA (eDNA) methods for detecting high-risk freshwater fishes in live trade in Canada Roy et al. 2018
393 Using environmental DNA to detect Hypophthalmichthys molitrix during the spawning period in the Yangtze River Ruan et al. 2018
394 Catching the fish with the worm: a case study on eDNA detection of the monogenean parasite Gyrodactylus salaris and two of its hosts, Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss) Rusch et al. 2018
395 Phylogenetic and environmental DNA insights into emerging aquatic parasites: implications for risk management Sana et al. 2018
396 MitoFish and MiFish pipeline: a mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding Sato et al. 2018
397 Usefulness of environmental DNA for detecting Schistosoma mansoni occurrence sites in Madagascar. Sato et al. 2018
398 Correlating sea lamprey density with environmental DNA detections in the lab Schloesser et al. 2018
399 Inference of genetic marker concentrations from field surveys to detect environmental DNA using Bayesian updating Schultz 2018
400 Mu-DNA: a modular universal DNA extraction method adaptable for a wide range of sample types Sellers et al. 2018
401 Environmental DNA (eDNA): A Promising Biological Survey Tool for Aquatic Species Detection Senapati et al. 2018
402 Tradeoffs of a portable, field-based environmental DNA platform for detecting invasive northern pike (Esox lucius) in Alaska Sepulveda et al. 2018
403 Establishing detection thresholds for environmental DNA using receiver operator characteristic (ROC) curves Serrao et al. 2018
404 Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms Seymour et al. 2018
405 Using Seawater to Document Coral-Zoothanthella Diversity: A New Approach to Coral Reef Monitoring Using Environmental DNA Shinzato et al. 2018
406 Water flow and biofilm cover influence environmental DNA (eDNA) detection in recirculating streams Shogren et al. 2018
407 Metabarcoding of shrimp stomach content: Harnessing a natural sampler for fish biodiversity monitoring Siegenthaler et al. 2018
408 Fecal source tracking and eDNA profling in an urban creek following an extreme rain event Staley et al. 2018
409 Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity Stat et al. 2018
410 Metabarcoding of benthic ciliate communities shows high potential for environmental monitoring in salmon aquaculture Stoeck et al. 2018
411 GoFish: A versatile nested PCR strategy for environmental DNA assays for marine vertebrates Stoeckle et al. 2018
412 Utility of eDNA and occupancy models for monitoring an endangered fish across diverse riverine habitats Strickland et al. 2018
413 Characterising planktonic dinoflagellate diversity in Singapore using DNA metabarcoding Sze et al. 2018
414 ANDeTM: A fully integrated environmental DNA sampling system Thomas et al. 2018
415 Concentrations of environmental DNA (eDNA) reflect spawning salmon abundance at fine spatial and temporal scales Tillotsona et al. 2018
416 Environmental DNA sampling as a surveillance tool for cane toad Rhinella marina introductions on offshore islands Tingley et al. 2018
417 Real-time multiplex PCR for simultaneous detection of multiple species from environmental DNA: an application on two Japanese medaka species Tsuji et al. 2018
418 Demonstration of the potential of environmental DNA as a tool for the detection of avian species Ushio et al. 2018
419 Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing Ushio et al. 2018
420 eDNA detection of corallivorous seastar (Acanthaster cf. solaris) outbreaks on the Great Barrier Reef using digital droplet PCR Uthicke et al. 2018
421 Entomological signatures in honey: an environmental DNA metabarcoding approach can disclose information on plant- sucking insects in agricultural and forest landscapes Utseri et al. 2018
422 Early detection of invasive exotic insect infestations using eDNA from crop surfaces Valentin et al. 2018
423 Using eDNA, sediment subfossils, and zooplankton nets to detect invasive spiny water flea (Bythotrephes longimanus) Walsh et al. 2018
424 A microcosm study of surface sediment environmental DNA: decay observation, abundance estimation, and fragment length comparison. Wei et al. 2018
425 Effects of treated sample weight and DNA marker length on sediment eDNA based detection of a benthic invertebrate Wei et al. 2018
426 Capture enrichment of aquatic environmental DNA: A first proof of concept Wilcox et al. 2018
427 Comment: The Importance of Sound Methodology in Environmental DNA Sampling Wilcox et al. 2018
428 Fine‐scale environmental DNA sampling reveals climate‐mediated interactions between native and invasive trout species Wilcox et al. 2018
429 Detection and persistence of environmental DNA from an invasive, terrestrial mammal Williams et al. 2018
430 Tracking the southern river terrapin (Batagur affinis) through environmental DNA: prospects and challenges Wilson et al. 2018
431 Using environmental DNA and occupancy modelling to identify drivers of eastern hellbender (Cryptobranchus alleganiensis alleganiensis) extirpation Wineland et al. 2018
432 Environmental DNA reveals nonmigratory individuals of Palaemon paucidens overwintering in Lake Biwa shallow waters Wu et al. 2018
433 Early detection of a highly invasive bivalve based on environmental DNA (eDNA) Xia et al. 2018
434 Conventional versus real‐time quantitative PCR for rare species detection Xia et al. 2018
435 Monitoring seasonal distribution of an endangered anadromous sturgeon in a large river using environmental DNA Xu et al. 2018
436 Species-specific detection of the endangered piscivorous cyprinid fish Opsariichthys uncirostris uncirostris, three-lips, using environmental DNA analysis Yamanaka et al. 2018
437 Development of quantitative PCR assays for the detection and quantification of lake sturgeon (Acipenser fulvescens) environmental DNA Yusishen et al. 2018
438 Advantages and Limitations of Environmental DNA/RNA Tools for Marine Biosecurity: Management and Surveillance of Non-indigenous Species Zaiko et al. 2018

対象となった分類群(~2019年)

魚類に次いで両生類が検出対となることが多いようです。魚類は淡水魚、両生類はサンショウウオ類やイモリが多かった覚えがあります。

最終更新: 2020/10/5
情報元: Tsuji et al.2019

掲載ジャーナル(~2020年10月まで)

総合的な雑誌であるPLoSOneに次いで、分子生物学分野のMolecular Ecology Resources、 そして環境DNAを中心とした雑誌であるEnvironmental DNA JournalがTop3となっています。

最終更新: 2020/10/5
情報元: Tsuji et al.2019

環境DNAで検出できる淡水魚種

環境省生物多様性センターが発表した「環境DNA分析技術を用いた淡水魚類調査手法の手引き」に掲載されているMiFishプライマー領域のDNA配列の有無と種特異的プライマーに関する論文の有無についてまとめた表になります。 種特異的プライマーの整備状況は把握しているものについて追記しました。

気になる種について検索をかけて、種特異的プライマーの表記をクリックすると参考となる論文にリンクするようになっています。

※ 複数種を対象としたユニバーサルプライマーについてはこちらを参照ください。

最終更新: 2022/6/15
情報元: 生物多様性センター

No. 和名 学名 種特異的プライマー 地域個体群 環境省RL2020 外来種リスト MiFish法で識別可能な種 MiFish法で識別に注意を要する種 MiFish領域の有無
1 ミツバヤツメ Entosphenus tridentatus LP
2 カワヤツメ Lethenteron japonicum VU
3 シベリアヤツメ Lethenteron kessleri NT
4 スナヤツメ北方種 Lethenteron sp. N VU
5 スナヤツメ南方種 Lethenteron sp. S TaqMan VU
6 チョウザメ Acipenser medirostris EX
7 アリゲーターガー Atractosteus spatula OY
8 スポッテッドガー Lepisosteus oculatus OY
9 ロングノーズガー Lepisosteus osseus OY
10 ショートノーズガー Lepisosteus platostomus OY
11 ニューギニアウナギ Anguilla bicolor pacifica DD
12 ニホンウナギ Anguilla japonica TaqMan EN
12 ニホンウナギ Anguilla japonica TaqMan EN
13 オオウナギ Anguilla marmorata TaqMan
14 コゲウツボ Uropterygius concolor CR
15 ナミダカワウツボ Echidna rhodochilus CR
16 ニシン Clupea pallasii LP
17 ドロクイ Nematalosa japonica EN
18 エツ Coilia nasus EN
19 コイ(飼育型) Cyprinus carpio TaqMan
20 コイ(野生型) Cyprinus carpio TaqMan LP
21 キンギョ Carassius auratus SYBR
22 オオキンブナ Carassius buergeri buergeri
23 ニゴロブナ Carassius buergeri grandoculis EN
24 ナガブナ Carassius buergeri subsp. 1 DD ×
25 キンブナ Carassius buergeri subsp. 2 VU
26 ゲンゴロウブナ Carassius cuvieri EN
27 ギンブナ Carassius sp.
28 フナ属の 1 種(琉球列島) Carassius sp. CR
29 ヤリタナゴ Tanakia lanceolata NT
30 ヤリタナゴ groupF(LA1) Tanakia lanceolata
31 ヤリタナゴ groupE(LA2) Tanakia lanceolata
32 ヤリタナゴ groupA(LA3) Tanakia lanceolata
33 ヤリタナゴ groupG(LA4) Tanakia lanceolata
34 ヤリタナゴ groupB Tanakia lanceolata
35 ヤリタナゴ groupC Tanakia lanceolata
36 ヤリタナゴ groupD-1 Tanakia lanceolata
37 ヤリタナゴ groupD-2 Tanakia lanceolata
38 ヤリタナゴ groupD-3 Tanakia lanceolata ×
39 アブラボテ Tanakia limbata NT
40 アブラボテ LI1 Tanakia limbata
41 アブラボテ LI2 Tanakia limbata
42 アブラボテ LI3 Tanakia limbata
43 ミヤコタナゴ Tanakia tanago CR
44 イチモンジタナゴ Acheilognathus cyanostigma CR
45 イチモンジタナゴ clade1 Acheilognathus cyanostigma
46 イチモンジタナゴ clade2 Acheilognathus cyanostigma
47 イチモンジタナゴ clade3 Acheilognathus cyanostigma
48 イタセンパラ Acheilognathus longipinnis SYBR CR
49 イタセンパラ(琵琶湖-淀川型) Acheilognathus longipinnis ×
50 イタセンパラ(濃尾型) Acheilognathus longipinnis
51 イタセンパラ(富山型) Acheilognathus longipinnis ×
52 オオタナゴ Acheilognathus macropterus OT
53 タナゴ Acheilognathus melanogaster EN
54 カネヒラ Acheilognathus rhombeus
55 アカヒレタビラ Acheilognathus tabira erythropterus EN
56 ミナミアカヒレタビラ Acheilognathus tabira jordani CR
57 セボシタビラ Acheilognathus tabira nakamurae CR
58 シロヒレタビラ Acheilognathus tabira tabira EN
59 キタノアカヒレタビラ Acheilognathus tabira tohokuensis EN
60 ゼニタナゴ Acheilognathus typus TaqMan CR
61 カゼトゲタナゴ Rhodeus atremius atremius EN
62 スイゲンゼニタナゴ Rhodeus atremius suigensis CR
63 ニッポンバラタナゴ Rhodeus ocellatus kurumeus CR
64 ニッポンバラタナゴ(大阪型) Rhodeus ocellatus kurumeus
65 ニッポンバラタナゴ(山陽型) Rhodeus ocellatus kurumeus
66 ニッポンバラタナゴ(九州型) Rhodeus ocellatus kurumeus
67 タイリクバラタナゴ Rhodeus ocellatus ocellatus JT
68 ハクレン Hypophthalmichthys molitrix TaqMan OT
69 コクレン Aristichthys nobilis TaqMan OT
70 ワタカ Ischikauia steenackeri CR
71 パールダニオ Danio albolineatus OT
72 ゼブラダニオ Danio rerio TaqMan(add) OT
73 カワバタモロコ Hemigrammocypris neglectus TaqMan EN
74 カワバタモロコ(本州-四国型) Hemigrammocypris neglectus
75 カワバタモロコ(九州型) Hemigrammocypris neglectus
76 ハス Opsariichthys uncirostris uncirostris TaqMan VU
77 オイカワ Zacco platypus TaqMan(add)
78 オイカワ group1 Zacco platypus
79 オイカワ group2 Zacco platypus
80 オイカワ group3 Zacco platypus
81 ヌマムツ Nipponocypris sieboldii
82 ヌマムツ group1 Nipponocypris sieboldii
83 ヌマムツ group2 Nipponocypris sieboldii
84 ヌマムツ group3 Nipponocypris sieboldii
85 カワムツ Nipponocypris temminckii
86 カワムツ group1 Nipponocypris temminckii
87 カワムツ group2 Nipponocypris temminckii
88 カワムツ group3 Nipponocypris temminckii
89 ヒナモロコ Aphyocypris chinensis CR
90 ソウギョ Ctenopharhyngodon idellus TaqMan OT
91 アオウオ Mylopharyngodon piceus ●(add) OT
92 ヤマナカハヤ Phoxinus lagowskii yamamotis DD ×
93 ヤチウグイ Phoxinus perenurus sachalinensis NT
94 アブラハヤ Rhynchocypris lagowskii steindachneri
95 タカハヤ Rhynchocypris oxycephalus jouyi
96 タカハヤ group1 Rhynchocypris oxycephalus jouyi
97 タカハヤ group2 Rhynchocypris oxycephalus jouyi
98 ジュウサンウグイ Tribolodon brandtii brandtii LP
99 ジュウサンウグイ TBB1 Tribolodon brandtii brandtii
100 ジュウサンウグイ TBB2 Tribolodon brandtii brandtii ×
101 マルタ Tribolodon brandtii maruta
102 ウグイ Tribolodon hakonensis SYBR(add)
103 ウグイ group1 Tribolodon hakonensis
104 ウグイ group2 Tribolodon hakonensis
105 ウグイ group3 Tribolodon hakonensis
106 ウグイ group4 Tribolodon hakonensis
107 ウグイ group5 Tribolodon hakonensis
108 ウグイ group6 Tribolodon hakonensis
109 ウケクチウグイ Tribolodon nakamurai EN
110 エゾウグイ Tribolodon sachalinensis LP
111 モツゴ Pseudorasbora parva SYBR(add)
111 モツゴ Pseudorasbora parva SYBR
112 モツゴ group1 Pseudorasbora parva
113 モツゴ group2 Pseudorasbora parva
114 モツゴ group3 Pseudorasbora parva
115 モツゴ group4 Pseudorasbora parva
116 ウシモツゴ Pseudorasbora pugnax CR
117 シナイモツゴ Pseudorasbora pumila CR
118 アブラヒガイ Sarcocheilichthys biwaensis CR
119 ビワヒガイ Sarcocheilichthys variegatus microoculus
120 カワヒガイ Sarcocheilichthys variegatus variegatus NT
121 カワヒガイ(東海型) Sarcocheilichthys variegatus variegatus
122 カワヒガイ(西日本型) Sarcocheilichthys variegatus variegatus
123 ムギツク Pungtungia herzi
124 ホンモロコ Gnathopogon caerulescens CR
125 タモロコ Gnathopogon elongatus elongatus
126 タモロコ E1(西日本型) Gnathopogon elongatus elongatus
127 タモロコ E2(東海型) Gnathopogon elongatus elongatus
128 タモロコ E3(伊那型) Gnathopogon elongatus elongatus
129 スワモロコ Gnathopogon elongatus suwae EX ×
130 ヨドゼゼラ Biwia yodoensis EN
131 ゼゼラ Biwia zezera VU
132 ゼゼラ(岐阜型) Biwia zezera
133 ゼゼラ(琵琶湖型) Biwia zezera
134 ゼゼラ(山陽型) Biwia zezera ×
135 ゼゼラ(九州型) Biwia zezera ×
136 ナガレカマツカ Pseudogobio agathonectris
137 カマツカ Pseudogobio esocinus
138 スナゴカマツカ Pseudogobio polystictus
139 ツチフキ Abbottina rivularis EN
140 ツチフキ(大陸型) Abbottina rivularis
141 ツチフキ(日本在来型) Abbottina rivularis
142 ニゴイ Hemibarbus barbus
143 コウライニゴイ Hemibarbus labeo
144 ズナガニゴイ Hemibarbus longirostris
145 コウライモロコ Squalidus biwae tsuchigae
146 スゴモロコ Squalidus chankaensis biwae VU
147 イトモロコ Squalidus gracilis gracilis
148 イトモロコ group1 Squalidus gracilis gracilis
149 イトモロコ group2 Squalidus gracilis gracilis
150 イトモロコ group3 Squalidus gracilis gracilis
151 デメモロコ Squalidus japonicus japonicus VU
152 デメモロコ(琵琶湖型) Squalidus japonicus japonicus
153 デメモロコ(濃尾型) Squalidus japonicus japonicus
154 アカヒレ Tanichthys albonubes OT
155 ドジョウ Misgurnus anguillicaudatus TaqMan NT
156 ドジョウ(在来系統) Misgurnus anguillicaudatus
157 ドジョウ(大陸系統) Misgurnus anguillicaudatus
158 キタドジョウ Misgurnus sp. (Clade A) DD
159 シノビドジョウ Misgurnus sp. IR DD
160 ヒョウモンドジョウ Misgurnus sp. OK DD
161 カラドジョウ Paramisgurnus dabryanus OT
162 アリアケスジシマドジョウ Cobitis kaibarai EN
163 オオガタスジシマドジョウ Cobitis magnostriata EN
164 ヤマトシマドジョウ Cobitis matsubarae VU
165 サンヨウコガタスジシマドジョウ Cobitis minamorii minamorii CR
166 ビワコガタスジシマドジョウ Cobitis minamorii oumiensis EN
167 サンインコガタスジシマドジョウ Cobitis minamorii saninensis EN
168 トウカイコガタスジシマドジョウ Cobitis minamorii tokaiensis EN
169 ヨドコガタスジシマドジョウ Cobitis minamorii yodoensis CR ×
170 オオヨドシマドジョウ Cobitis sakahoko EN
171 ヒナイシドジョウ Cobitis shikokuensis EN
172 オオシマドジョウ Cobitis sp. BIWAE type A
173 ニシシマドジョウ Cobitis sp. BIWAE type B
174 ヒガシシマドジョウ Cobitis sp. BIWAE type C
175 トサシマドジョウ Cobitis sp. BIWAE type D VU
176 ヤマトシマドジョウ A 型 Cobitis sp. 'yamato' complex Type A
177 オンガスジシマドジョウ Cobitis striata fuchigamii EN
178 ハカタスジシマドジョウ Cobitis striata hakataensis CR
179 チュウガタスジシマドジョウ Cobitis striata striata VU
180 イシドジョウ Cobitis takatsuensis EN
181 タンゴスジシマドジョウ Cobitis takenoi CR
182 アジメドジョウ Niwaella delicata VU
183 アジメドジョウ G(太平洋側型) Niwaella delicata
184 アジメドジョウ S(日本海側型) Niwaella delicata
185 フクドジョウ Barbatula oreas
186 ヒメドジョウ Lefua costata
187 エゾホトケドジョウ Lefua costata nikkonis EN
188 ホトケドジョウ Lefua echigonia EN
189 ホトケドジョウ(北陸型) Lefua echigonia ×
190 ホトケドジョウ(近畿型) Lefua echigonia
191 ホトケドジョウ(東海型) Lefua echigonia
192 ホトケドジョウ(山形型) Lefua echigonia
193 ホトケドジョウ(東北型) Lefua echigonia
194 ホトケドジョウ(北関東型) Lefua echigonia
195 ホトケドジョウ(南関東型) Lefua echigonia
196 ホトケドジョウ(岩手型) Lefua echigonia
197 ナガレホトケドジョウ Lefua sp. 1 EN
198 ナガレホトケドジョウ(紀伊-四国型) Lefua sp. 1
199 ナガレホトケドジョウ(山陽-山陰型) Lefua sp. 1
200 トウカイナガレホトケドジョウ Lefua sp. 2 EN
201 アユモドキ Parabotia curtus TaqMan CR
202 アリアケギバチ Tachysurus aurantiacus VU
203 ネコギギ Tachysurus ichikawai EN
204 ギギ Tachysurus nudiceps
205 ギバチ Tachysurus tokiensis VU
206 コウライギギ Pseudobagrus fulvidraco OT
207 ナマズ Silurus asotus
208 ビワコオオナマズ Silurus biwaensis
209 イワトコナマズ Silurus lithophilus NT
210 タニガワナマズ Silurus tomodai
211 アカザ Liobagrus reinii TaqMan VU
212 アカザ Group1 Liobagrus reinii
213 アカザ Group2 Liobagrus reinii
214 チャネルキャットフィッシュ Ictalurus punctatus
215 ヒレナマズ Clarias fuscus OT
216 マダラロリカリア Pterygoplichthys disjunctivus OT
217 シシャモ Spirinchus lanceolatus TaqMan LP
218 キュウリウオ Osmerus dentex
219 ワカサギ Hypomesus nipponensis ●(add)
220 イシカリワカサギ Hypomesus olidus NT
221 アユ Plecoglossus altivelis altivelis TaqMan
222 リュウキュウアユ Plecoglossus altivelis ryukyuensis TaqMan CR
223 アリアケシラウオ Salanx ariakensis CR
224 アリアケヒメシラウオ Neosalanx reganius CR ×
225 イトウ Hucho perryi TaqMan EN
226 ブラウントラウト Salmo trutta ●(add) SK
227 カワマス Salvelinus fontinalis ●(add) OT
228 ゴギ Salvelinus leucomaenis imbrius VU
229 ヤマトイワナ Salvelinus leucomaenis japonicus LP
230 アメマス Salvelinus leucomaenis leucomaenis TaqMan
231 ニッコウイワナ Salvelinus leucomaenis pluvius DD
232 オショロコマ Salvelinus malma krascheninnikovi TaqMan VU
233 ミヤベイワナ Salvelinus malma miyabei VU
234 レイクトラウト Salvelinus namaycush ●(add) SK
235 カラフトマス Oncorhynchus gorbuscha
236 クニマス Oncorhynchus kawamurae EW ×
237 サケ Oncorhynchus keta TaqMan(add)
238 サツキマス(アマゴ) Oncorhynchus masou ishikawae NT
239 サクラマス(ヤマメ) Oncorhynchus masou masou NT
240 ニジマス Oncorhynchus mykiss TaqMan SK
241 ベニザケ(ヒメマス) Oncorhynchus nerka CR
242 ビワマス Oncorhynchus sp. NT
243 タウナギ(本土産) Monopterus albus
244 タウナギ(沖縄産) Monopterus sp. CR
245 イトヨ Gasterosteus aculeatus aculeatus TaqMan
246 イトヨ(降海型) Gasterosteus aculeatus aculeatus ×
247 イトヨ(福井型) Gasterosteus aculeatus aculeatus ×
248 イトヨ(那須型) Gasterosteus aculeatus aculeatus
249 太平洋系陸封型イトヨ Gasterosteus aculeatus subsp. 1 LP
250 ハリヨ Gasterosteus aculeatus subsp. 2 CR
251 ハリヨ(濃尾型) Gasterosteus aculeatus subsp. 2
252 ハリヨ(近江型) Gasterosteus aculeatus subsp. 2
253 イトヨ湖沼型(福島県) Gasterosteus aculeatus subsp. 3
254 ニホンイトヨ Gasterosteus nipponicus LP
255 ミナミトミヨ Pungitius kaibarae EX
256 トミヨ属淡水型 Pungitius sp. 1 LP
257 トミヨ属汽水型 Pungitius sp. 2 NT
258 トミヨ属雄物型 Pungitius sp. 3 CR
259 ムサシトミヨ Pungitius sp. 4 CR
260 エゾトミヨ Pungitius tymensis VU
261 アミメカワヨウジ Hippichthys heptagonus EN
262 ホシイッセンヨウジ Microphis argulus CR ×
263 ヒメテングヨウジ Microphis jagorii CR ×
264 タニヨウジ Microphis retzii CR ×
265 カワボラ Cestraeus plicatilis CR
266 ナガレフウライボラ Crenimugil heterocheilos EN ×
267 オニボラ Ellochelon vaigiensis DD
268 アンピンボラ Chelon subviridis DD
269 モンナシボラ Moolgarda engeli DD
270 カマヒレボラ Moolgarda pedaraki DD
271 ペヘレイ Odontesthes bonariensis OT
272 ネッタイイソイワシ Atherinomorus duodecimalis DD
273 ミナミギンイソイワシ Hypoatherina temminckii DD
274 グリーンソードテール Xiphophorus hellerii
275 カダヤシ Gambusia affinis TaqMan(add) JT
276 グッピー Poecilia reticulata TaqMan(add) OT
277 ミナミメダカ Oryzias latipes TaqMan VU
277 ミナミメダカ Oryzias latipes TaqMan VU
278 ミナミメダカ(ヒメダカ) Oryzias latipes
279 キタノメダカ Oryzias sakaizumii TaqMan VU
280 コモチサヨリ Zenarchopterus dunckeri NT
281 クルメサヨリ Hyporhamphus intermedius NT
282 アゴヒゲオコゼ Tetraroge barbata CR
283 ヒゲソリオコゼ Tetraroge nigra CR ×
284 アカメ Lates japonicus EN
285 インドタカサゴイシモチ Pseudambassis ranga
286 ナンヨウタカサゴイシモチ Ambassis interrupta DD
287 ハナダカタカサゴイシモチ Ambassis macracanthus DD ×
288 オヤニラミ Coreoperca kawamebari TaqMan EN
289 オヤニラミ group1 Coreoperca kawamebari ×
290 オヤニラミ group2 Coreoperca kawamebari ×
291 スズキ Lateolabrax japonicus TaqMan LP
292 シラヌイハタ Epinephelus bontoides DD
293 ブルーギル Lepomis macrochirus TaqMan KT
294 コクチバス Micropterus dolomieu ●(add) KT
294 コクチバス Micropterus dolomieu TaqMan KT
295 オオクチバス Micropterus salmoides TaqMan KT
296 カガミテンジクダイ Yarica hyalosoma CR
297 ワキイシモチ Fibramia lateralis DD ×
298 ヒルギヌメリテンジクダイ Pseudamia amblyuroptera DD
299 ウラウチフエダイ Lutjanus goldiei CR ×
300 ダイダイコショウダイ Plectorhinchus albovittatus DD ×
301 ナンヨウチヌ Acanthopagrus pacificus VU
302 アオギス Sillago parvisquamis CR
303 アトクギス Sillaginops macrolepis EN
304 テッポウウオ Toxotes jaculatrix CR
305 カワスズメ Oreochromis mossambicus ●(add) OT
306 ナイルティラピア Oreochromis niloticus ●(add) OT
307 ジルティラピア Tilapia zillii OT
308 ニセシマイサキ Mesopristes argenteus CR
309 ヨコシマイサキ Mesopristes cancellatus CR
310 シミズシマイサキ Mesopristes iravi CR
311 トゲナガユゴイ Kuhlia munda EN ×
312 ヤマノカミ Trachidermus fasciatus EN
313 エゾハナカジカ Cottus amblystomopsis
314 カンキョウカジカ Cottus hangiongensis LP
315 カマキリ Cottus kazika VU
316 ハナカジカ Cottus nozawae LP
317 ハナカジカ(北海道型) Cottus nozawae
318 ハナカジカ(北東北型) Cottus nozawae ×
319 ハナカジカ(山形型) Cottus nozawae
320 カジカ Cottus pollux NT
321 カジカ小卵型 Cottus reinii EN ×
322 ウツセミカジカ(琵琶湖型) Cottus reinii
323 ウツセミカジカ(回遊型) Cottus reinii
324 カジカ中卵型 Cottus sp.ME TaqMan(add) EN
325 ウラウチヘビギンポ Enneapterygius cheni CR ×
326 ヒルギギンポ Omox biporos CR ×
327 ゴマクモギンポ Omobranchus elongatus DD
328 カワギンポ Omobranchus ferox CR ×
329 ナリタイトヒキヌメリ Pseudocalliurichthys ikedai DD ×
330 ツバサハゼ Rhyacichthys aspro CR
331 イシドンコ Odontobutis hikimius VU
332 ドンコ Odontobutis obscura
333 ドンコ(西九州型) Odontobutis obscura
334 ドンコ(西瀬戸内海型) Odontobutis obscura
335 ドンコ(東瀬戸内海型) Odontobutis obscura
336 ドンコ(山陰-琵琶湖-伊勢型) Odontobutis obscura
337 タナゴモドキ Hypseleotris cyprinoides EN
338 オウギハゼ Bunaka gyrinoides NT
339 テンジクカワアナゴ Eleotris fusca
340 カワアナゴ Eleotris oxycephala
341 エリトゲハゼ Belobranchus belobranchus DD ×
342 ヤエヤマノコギリハゼ Butis amboinensis CR
343 ジャノメハゼ Bostrychus sinensis EN
344 ホシマダラハゼ Ophiocara porocephala VU
345 タメトモハゼ Giuris sp. 1 EN
346 ゴシキタメトモハゼ Giuris sp. 2 EN ×
347 ドウクツミミズハゼ Luciogobius albus CR ×
348 ネムリミミズハゼ Luciogobius dormitoris DD ×
349 ナガレミミズハゼ Luciogobius fluvialis NT ×
350 ユウスイミミズハゼ Luciogobius fonticola NT
351 イドミミズハゼ Luciogobius pallidus NT
352 ミナミヒメミミズハゼ Luciogobius ryukyuensis VU
353 ヒモハゼ Eutaeniichthys gilli NT
354 シロウオ Leucopsarion petersii VU
355 ワラスボ Odontamblyopus lacepedii VU
356 アサガラハゼ Caragobius urolepis VU
357 チワラスボ Taenioides cirratus EN
358 ヒゲワラスボ Trypauchenopsis intermedia VU
359 トカゲハゼ Scartelaos histophorus CR
360 ムツゴロウ Boleophthalmus pectinirostris EN
361 タビラクチ Apocryptodon punctatus VU
362 トビハゼ Periophthalmus modestus NT
363 ヒメトサカハゼ Cristatogobius aurimaculatus CR ×
364 トサカハゼ Cristatogobius lophius EN
365 クロトサカハゼ Cristatogobius nonatoae CR
366 シマサルハゼ Oxyurichthys sp. 2 CR ×
367 ミスジハゼ Callogobius sp. CR ×
368 ハゼクチ Acanthogobius hasta VU
369 ミナミアシシロハゼ Acanthogobius insularis VU
370 ヨロイボウズハゼ Lentipes armatus CR
371 カエルハゼ Smilosicyopus leprurus CR
372 ヒノコロモボウズハゼ Sicyopus auxilimentus DD ×
373 アカボウズハゼ Sicyopus zosterophorus CR
374 ボウズハゼ Sicyopterus japonicus
375 ルリボウズハゼ Sicyopterus lagocephalus VU
376 ヒスイボウズハゼ Stiphodon alcedo CR
377 コンテリボウズハゼ Stiphodon atropurpureus CR ×
378 ハヤセボウズハゼ Stiphodon imperiorientis CR
379 トラフボウズハゼ Stiphodon multisquamus DD ×
380 ニライカナイボウズハゼ Stiphodon niraikanaiensis DD ×
381 ナンヨウボウズハゼ Stiphodon percnopterygionus
382 カキイロヒメボウズハゼ Stiphodon surrufus DD ×
383 ワカケサラサハゼ Amblygobius linki NT ×
384 シラヌイハゼ Silhouettea dotui NT ×
385 ニセシラヌイハゼ Silhouettea sp. NT ×
386 ギンポハゼ Parkraemeria saltator VU
387 マングローブゴマハゼ Pandaka lidwilli VU
388 ゴマハゼ Pandaka sp. VU ×
389 カブキハゼ Eugnathogobius mindora NT ×
390 ホホグロハゼ Mugilogobius cavifrons EN
391 フタホシハゼ Mugilogobius fuscus DD ×
392 ムジナハゼ Mugilogobius mertoni VU ×
393 コクチスナゴハゼ Pseudogobius gastrospilos DD ×
394 マサゴハゼ Pseudogobius masago VU
395 シマエソハゼ Schismatogobius ampluvinculus EN
396 エソハゼ Schismatogobius roxasi EN
397 ドウケハゼ Stenogobius ophthalmoporus DD ×
398 タネカワハゼ Stenogobius sp.
399 クロミナミハゼ Awaous melanocephalus
400 ショウキハゼ Tridentiger barbatus NT
401 シモフリシマハゼ Tridentiger bifasciatus
402 ヌマチチブ Tridentiger brevispinis
403 ナガノゴリ Tridentiger kuroiwae
404 シロチチブ Tridentiger nudicervicus NT
405 チチブ Tridentiger obscurus
406 アカオビシマハゼ Tridentiger trigonocephalus
407 タスキヒナハゼ Redigobius balteatus DD
408 カワクモハゼ Bathygobius sp. CR ×
409 ビワヨシノボリ Rhinogobius biwaensis DD
410 クロヨシノボリ Rhinogobius brunneus
411 カワヨシノボリ Rhinogobius flumineus
412 カワヨシノボリ group1 Rhinogobius flumineus ×
413 カワヨシノボリ group2 Rhinogobius flumineus
414 カワヨシノボリ group3 Rhinogobius flumineus
415 オオヨシノボリ Rhinogobius fluviatilis
416 クロダハゼ Rhinogobius kurodai
417 ルリヨシノボリ Rhinogobius mizunoi
418 シマヨシノボリ Rhinogobius nagoyae
419 オガサワラヨシノボリ Rhinogobius ogasawaraensis EN
420 ゴクラクハゼ Rhinogobius similis
421 アオバラヨシノボリ Rhinogobius sp. BB CR
422 シマヒレヨシノボリ Rhinogobius sp. BF NT
423 ヒラヨシノボリ Rhinogobius sp. DL
424 カズサヨシノボリ Rhinogobius sp. KZ
425 アヤヨシノボリ Rhinogobius sp. MO
426 オウミヨシノボリ Rhinogobius sp. OM
427 旧トウヨシノボリ類 Rhinogobius sp. OR
428 トウカイヨシノボリ Rhinogobius sp. TO NT
429 キバラヨシノボリ Rhinogobius sp. YB EN
430 コンジキハゼ Glossogobius aureus CR
431 アゴヒゲハゼ Glossogobius bicirrhosus CR ×
432 スダレウロハゼ Glossogobius circumspectus NT
433 フタゴハゼ Glossogobius sp. DD ×
434 ニセツムギハゼ Acentrogobius audax NT ×
435 ホクロハゼ Acentrogobius caninus NT
436 ホホグロスジハゼ Acentrogobius suluensis NT ×
437 キララハゼ Acentrogobius viridipunctatus VU
438 ジュズカケハゼ Gymnogobius castaneus NT
439 キセルハゼ Gymnogobius cylindricus EN
440 イサザ Gymnogobius isaza CR
441 エドハゼ Gymnogobius macrognathos VU
442 ヘビハゼ Gymnogobius mororanus DD
443 コシノハゼ Gymnogobius nakamurae CR ×
444 シマウキゴリ Gymnogobius opperiens
445 スミウキゴリ Gymnogobius petschiliensis LP
446 クボハゼ Gymnogobius scrobiculatus EN
447 ムサシノジュズカケハゼ Gymnogobius sp. 1 EN
448 ホクリクジュズカケハゼ Gymnogobius sp. 2 CR
449 ホクリクジュズカケハゼ group1 Gymnogobius sp. 2 ×
450 ホクリクジュズカケハゼ group2 Gymnogobius sp. 2
451 シンジコハゼ Gymnogobius taranetzi VU
452 チクゼンハゼ Gymnogobius uchidai VU
453 ウキゴリ Gymnogobius urotaenia
454 ウラウチイソハゼ Eviota ocellifer CR
455 ナミノコハゼ Gobitrichinotus radiocularis NT ×
456 トンガスナハゼ Kraemeria tongaensis DD ×
457 クジャクハゼ Parioglossus caeruleolineatus DD ×
458 ヒメサツキハゼ Parioglossus interruptus CR ×
459 マイコハゼ Parioglossus lineatus DD ×
460 ボルネオハゼ Parioglossus palustris VU
461 コビトハゼ Parioglossus rainfordi EN ×
462 コマチハゼ Parioglossus taeniatus CR ×
463 チョウセンブナ Macropodus ocellatus
464 タイワンキンギョ Macropodus opercularis CR
465 カムルチー Channa argus TaqMan
466 コウタイ Channa asiatica
467 タイワンドジョウ Channa maculata
468 クサフグ Takifugu alboplumbeus LP
469 カタクチイワシ Engraulis japonicus TaqMan(add) Y 追加 未記入
470 マアジ Japanese jack mackerel TaqMan(add) Y 追加 未記入
471 ボラ Mugil cephalus ●(add) Y 追加 未記入
472 シラウオ Salangichthys microdon ●(add) 未記入 追加 未記入 未記入
473 クロダイ Acanthopagrus schlegelii TaqMan(add) 未記入 追加 未記入

<表中の凡例>

  1. 環境省RL2020
    EX:絶滅、EW:野生絶滅、CR:絶滅危惧ⅠA 類、EN:絶滅危惧ⅠB 類、VU:絶滅危惧Ⅱ類、NT:準絶滅危惧、DD:情報不足、LP:絶滅のおそれのある地域個体群
  2. 外来種リスト
    OY:その他の定着予防外来種、KT:緊急対策外来種、JT:重点対策外来種、OT:その他の総合対策外来種、SK:産業管理外来種
  3. 地域個体群
    ◎:地域個体群として掲載されている種
  4. MiFish 法で識別に注意を要する種
    △:MiFish 法で種(もしくは亜種・系統)レベルの同定が難しいと判断された種
  5. MiFish 法で識別が可能と判断された種
    ◎:MiFish 法で種(もしくは亜種・系統)レベルの同定が可能な種
  6. MiFish 領域の有無
    MiFish領域 ◎:登録配列あり、×:登録配列なし

PDF tableからcsvへの変換コード

環境DNAで検出できる生物種(魚類以外)

魚類以外にも環境DNAによる検出事例が増えてきたのでまとめ始めました。

使用される際にはPrimer blastやTm calculatorなどで種特異性とアニーリング温度を確認し、文献中の条件に十分注意したうえでご使用ください。また、プローブの蛍光色素の選択にも注意して使用してください。

最終更新: 2022/8/14

No. 分類 和名 学名 種特異的プライマー F-seq R-seq Pr-seq アニーリング温度(℃)
1 Insecta ヒゲナガカワトビケラ Stenopsyche marmorata SYBR 非公開 非公開 - 非公開
2 Bivalvia カワヒバリガイ Limnoperna fortunei TaqMan 5′-CATAGAACCCCAGCAGTTGAC A-3 5′-AACGAACCGCCGATTGAC-3′ 5′-
[FAM]-AGCTGCTTTATCTCTTC-[MBG]-3′
60
3 Bivalvia ヤマトシジミ Corbicula japonica TaqMan 5′-GGTTTAGGGTAGGTGATGCTACTTTG-3′ 5′-AAGGATTTGTTGATCCAGTTTCG-3′ 5'-[FAM]-TTGTTTTTCATTTTCTTGGTCC-[NFQ]-[MGB]-3′ 60
4 Decapoda スジエビ Palaemon paucidens TaqMan 5′-AAGTCTAACCTGCCCACTGAGTTA-3′ 5′-TTTAAGCCTTTTCACTTAAAGGTCA-3′ 5'-[FAM]-ATGAGGGAAAAACTG-[NFQ]-[MGB]-3′ 60
5 Reptiles シマヘビ Elaphe quadrivirgata TaqMan 非公開 非公開 非公開 非公開
6 Reptiles ヤマカガシ Rhabdophis tigrinus TaqMan 非公開 非公開 非公開 非公開
7 Reptiles ニホンマムシ Gloydius blomhoffii TaqMan 非公開 非公開 非公開 非公開
8 Insecta ヒメタイコウチ Nepa hoffmanni TaqMan 5′-ATAGGACGAGAAGACCCTGT-3’ 5′-ATAGGATCAATAAAACACTCATCCG-3′ 5'-[FAM]-TTGTTGGGGCGACAGGGAGA-[TAMRA]-3′ 60
9 Echinodermata アカナマコ(mt) Apostichopus japonicus SYBR 5′-GTCACAAACTGGGATGATATGGAG-3’ 5′-TCCACTCAACCCTAAAGCCAA-3′ - 65
10 Echinodermata アカナマコ(nu) Apostichopus japonicus SYBR 5′-AGGTGCTCCAGACATGGCTTTCCCA-3’ 5′-AAGCAATATTGCCCACGCAGGAG-3′ - 60
11 Decapoda ニホンザリガニ Cambaroides japonicus TaqMan 非公開 非公開 非公開 非公開
12 Decapoda ウチダザリガニ Pacifastacus leniusculus TaqMan 非公開 非公開 非公開 非公開
13 Plant オオカタナダモ Egeria densa TaqMan 5′-CATTTCTCCTTCATTGTATTCTTTCACA-3′ 5′-ATTTCTATCTGTATCGTAGCCACCAA-3′ 5'-[FAM]-CGGGTCCGAACAGAAATGCTTCTCTCT--[TAMRA]-3′ 60
14 Bivalvia マツカサガイ(クレード1の一部, 2) Pronodularia japanensis TaqMan 非公開 非公開 非公開 非公開
15 Plant クロモ Hydrilla verticillata TaqMan 5′-TTTGCGCGAATATGTAGAACTTGT-3′ 5′-GCCAAGGTTTTAGCACAGGAAA-3′ 5'-[FAM]-ATTATTGTAGTGGATCTTCA-[NFQ]-[MGB]-3′ 58
16 Decapoda アメリカザリガニ Procambarus clarkii TaqMan 非公開 非公開 非公開 非公開
17 Amphibia ウシガエル Lithobates catesbeiana TaqMan 非公開 非公開 非公開 非公開
18 Amphibia オオサンショウウオ Andrias japonicus TaqMan 5′-CGGCGTTCTTCAACCATTG-3′ 5′-AGCTCAAATTATTAAGGAGGTGGTTAA-3′ 5'-[FAM]-ACACTCTTTTTAATTGCCCCAGT-[NFQ]-[MGB]-3′ 60
19 Amphibia チュウゴクオオサンショウウオ Andrias davidianus TaqMan 5′-AACACTCTTTTTAATTGCCCCAATAT-3′ 5′-GTTCTATTTATCCTTGCATTATCCAGT-3′ 5′-CACTAATCACCTCCTTAAT-3′ ※1 60
21 Decapoda モクズガニ Eriocheir japonica TaqMan 5′-TGCTAAAAAAGGGAACCCACATAGA-3′ 5′-GCGGGTATTATTATTCATAGAGTCGGT-3′ 5'-[FAM]-AAGATACTCTTAGCGGTATAAA-[NFQ]-[MGB]-3′ 60

※1 : プローブの蛍光色素が論文で未記載

MiFishデータベースに登録されている魚種ごとの配列数

日本淡水魚を中心にMiFishデータベースに登録されている種に対する登録配列数をまとめました。MiFish領域の列が×でかつ、配列数が0のものは現状公開されているMiFishのデータベースには無いものになります。ただ更新が活発なのでNCBIには既にあるかもしれません。

ここで表記してるものに関してはNCBIにのみ登録配列があっても、今はあえて追加はしておりません。

最終更新: 2020/10/16
情報元: Miya et al. 2020

ID 和名 学名 MiFish
領域
MiFishDB
登録配列数
1 ミツバヤツメ Entosphenus tridentatus 2
2 スナヤツメ北方種 Lethenteron sp. N. 8
3 スナヤツメ南方種 Lethenteron sp. S. 6
4 シベリアヤツメ Lethenteron kessleri 1
5 カワヤツメ Lethenteron japonicum 1
6 チョウザメ Acipenser medirostris 2
7 アリゲーターガー Atractosteus spatula 4
8 ロングノーズガー Lepisosteus osseus 4
9 スポッテッドガー Lepisosteus oculatus 5
10 ニューギニアウナギ Anguilla bicolor pacifica 5
11 ニホンウナギ Anguilla japonica 8
12 オオウナギ Anguilla marmorata 6
13 コゲウツボ Uropterygius concolor 3
14 ナミダカワウツボ Echidna rhodochilus 1
15 ニシン Clupea pallasii 6
16 ドロクイ Nematalosa japonica 2
17 エツ Coilia nasus 7
18 コイ(飼育品種) Cyprinus carpio 19
19 コイ(ノゴイ) Cyprinus carpio 19
20 ゲンゴロウブナ Carassius cuvieri 3
21 キンギョ Carassius auratus 14
22 ニゴロブナ Carassius auratus grandoculis 2
23 ナガブナ Carassius buergeri subsp. 1 × -
24 キンブナ Carassius auratus subsp KINBUNA 3
25 オオキンブナ Carassius buergeri buergeri -
26 ギンブナ Carassius auratus langsdorfii 3
27 フナ属の一種(琉球列島) Carassius sp. × -
28 ミヤコタナゴ Tanakia tanago 2
29 ヤリタナゴ Tanakia lanceolata 7
30 アブラボテ Tanakia limbata 5
31 カネヒラ Acheilognathus rhombeus 4
32 オオタナゴ Acheilognathus macropterus 4
33 イチモンジタナゴ Acheilognathus cyanostigma 3
34 タナゴ Acheilognathus melanogaster 1
35 イタセンパラ Acheilognathus longipinnis 1
36 ミナミアカヒレタビラ Acheilognathus tabira jordani 2
37 セボシタビラ Acheilognathus tabira nakamurae 2
38 シロヒレタビラ Acheilognathus tabira tabira 2
39 アカヒレタビラ Acheilognathus tabira erythropterus 1
40 キタノアカヒレタビラ Acheilognathus tabira tohokuensis 1
41 ゼニタナゴ Acheilognathus typus 2
42 タイリクバラタナゴ Rhodeus ocellatus ocellatus 4
43 ニッポンバラタナゴ Rhodeus ocellatus kurumeus 3
44 スイゲンゼニタナゴ Rhodeus atremius suigensis 1
45 カゼトゲタナゴ Rhodeus atremius atremius 2
46 ハクレン Hypophthalmichthys molitrix 30
47 コクレン Hypophthalmichthys nobilis 37
48 ワタカ Ischikauia steenackeri 2
49 パールダニオ Danio albolineatus 1
50 ゼブラダニオ Danio rerio 9
51 カワバタモロコ Hemigrammocypris neglectus 2
52 ハス Opsariichthys uncirostris uncirostris 1
53 オイカワ Zacco platypus 13
54 カワムツ Nipponocypris temminckii 5
55 ヌマムツ Nipponocypris sieboldii 4
56 ヒナモロコ Aphyocypris chinensis 1
57 ソウギョ Ctenopharyngodon idella 5
58 アオウオ Mylopharyngodon piceus 7
59 ヤチウグイ Rhynchocypris percnurus sachalinensis 5
60 アブラハヤ Rhynchocypris lagowskii steindachneri 6
61 ヤマナカハヤ Phoxinus lagowskii yamamotis × -
62 タカハヤ Rhynchocypris oxycephalus jouyi 8
63 ジュウサンウグイ Tribolodon brandtii brandtii 2
64 マルタ Tribolodon brandtii maruta 1
65 ウケクチウグイ Tribolodon nakamurai 1
66 エゾウグイ Tribolodon sachalinensis 5
67 ウグイ Tribolodon hakonensis 3
68 モツゴ Pseudorasbora parva 4
69 シナイモツゴ Pseudorasbora pumila 3
70 ウシモツゴ Pseudorasbora pugnax 1
71 アブラヒガイ Sarcocheilichthys biwaensis 1
72 カワヒガイ Sarcocheilichthys variegatus variegatus 2
73 ビワヒガイ Sarcocheilichthys variegatus microoculus 2
74 ムギツク Pungtungia herzi 3
75 タモロコ Gnathopogon elongatus elongatus 6
76 スワモロコ Gnathopogon elongatus suwae × -
77 ホンモロコ Gnathopogon caerulescens 1
78 ゼゼラ Biwia zezera 3
79 ヨドゼゼラ Biwia yodoensis 1
80 カマツカ Pseudogobio esocinus 10
81 ナガレカマツカ Pseudogobio agathonectris 1
82 スナゴカマツカ Pseudogobio polysticta 1
83 ツチフキ Abbottina rivularis 13
84 ズナガニゴイ Hemibarbus longirostris 2
85 コウライニゴイ Hemibarbus labeo 6
86 ニゴイ Hemibarbus barbus 2
87 イトモロコ Squalidus gracilis gracilis 3
88 デメモロコ Squalidus japonicus japonicus 3
89 スゴモロコ Squalidus chankaensis biwae 3
90 コウライモロコ Squalidus chankaensis tsuchigae 5
91 アカヒレ Tanichthys albonubes 1
92 ドジョウ Misgurnus anguillicaudatus 26
93 キタドジョウ Misgurnus sp CladeA 8
94 ヒョウモンドジョウ Misgurnus sp OK × -
95 シノビドジョウ Misgurnus sp IR 1
96 ドジョウ(大陸産) Misgurnus anguillicaudatus Clade B-1 -
97 カラドジョウ Paramisgurnus dabryanus 10
98 オオシマドジョウ Cobitis sp BIWAE typeA 5
99 ニシシマドジョウ Cobitis sp BIWAE typeB 12
100 ヒガシシマドジョウ Cobitis sp BIWAE typeC 5
101 トサシマドジョウ Cobitis sp BIWAE typeD × 2
102 サンヨウコガタスジシマドジョウ Cobitis minamorii minamorii 2
103 トウカイコガタスジシマドジョウ Cobitis minamorii tokaiensis 3
104 ビワコガタスジシマドジョウ Cobitis minamorii oumiensis 1
105 ヨドコガタスジシマドジョウ Cobitis minamorii yodoensis × -
106 サンインコガタスジシマドジョウ Cobitis minamorii saninensis 1
107 チュウガタスジシマドジョウ Cobitis striata striata 2
108 オンガスジシマドジョウ Cobitis striata fuchigamii × 1
109 ハカタスジシマドジョウ Cobitis striata hakataensis × 1
110 アリアケスジシマドジョウ Cobitis kaibarai 2
111 オオガタスジシマドジョウ Cobitis magnostriata 1
112 タンゴスジシマドジョウ Cobitis takenoi 1
113 ヤマトシマドジョウ Cobitis matsubarae 2
114 ヤマトシマドジョウA型 Cobitis sp 'yamato' complex typeA × 1
115 オオヨドシマドジョウ Cobitis sakahoko 1
116 イシドジョウ Cobitis takatsuensis 3
117 ヒナイシドジョウ Cobitis shikokuensis 1
118 アジメドジョウ Niwaella delicata 3
119 フクドジョウ Barbatula barbatula 2
120 エゾホトケドジョウ Lefua nikkonis 2
121 ヒメドジョウ Lefua costata 3
122 ホトケドジョウ Lefua echigonia 7
123 ナガレホトケドジョウ Lefua torrentis 2
124 トウカイナガレホトケドジョウ Lefua tokaiensis 1
125 アユモドキ Parabotia curta 2
126 ギギ Tachysurus nudiceps 1
127 ネコギギ Tachysurus ichikawai 1
128 ギバチ Tachysurus tokiensis 3
129 アリアケギバチ Tachysurus aurantiacus × 1
130 コウライギギ Tachysurus fulvidraco 3
131 イワトコナマズ Silurus lithophilus 1
132 タニガワナマズ Silurus tomodai 1
133 ビワコオオナマズ Silurus biwaensis 1
134 ナマズ Silurus asotus 13
135 アカザ Liobagrus reinii 1
136 チャネルキャットフィッシュ Ictalurus punctatus 3
137 ヒレナマズ Clarias fuscus 3
138 マダラロリカリア Pterygoplichthys disjunctivus 2
139 シシャモ Spirinchus lanceolatus 2
140 キュウリウオ Osmerus dentex 1
141 ワカサギ Hypomesus nipponensis 1
142 イシカリワカサギ Hypomesus olidus 1
143 アユ Plecoglossus altivelis altivelis 3
144 リュウキュウアユ Plecoglossus altivelis ryukyuensis × -
145 アリアケシラウオ Salanx ariakensis 2
146 アリアケヒメシラウオ Neosalanx reganius × -
147 イトウ Hucho perryi 1
148 ブラウントラウト Salmo trutta 5
149 カワマス Salvelinus fontinalis 4
150 レイクトラウト Salvelinus namaycush 2
151 アメマス Salvelinus leucomaenis leucomaenis 1
152 ヤマトイワナ Salvelinus leucomaenis japonicus 2
153 ニッコウイワナ Salvelinus leucomaenis pluvius 2
154 ゴギ Salvelinus leucomaenis imbrius 1
155 オショロコマ Salvelinus malma krascheninnikovi 1
156 ミヤベイワナ Salvelinus malma miyabei × 1
157 ニジマス Oncorhynchus mykiss 10
158 サケ Oncorhynchus keta 4
159 ヒメマス Oncorhynchus nerka 6
160 クニマス Oncorhynchus kawamurae × -
161 カラフトマス Oncorhynchus gorbuscha 4
162 サクラマス(ヤマメ) Oncorhynchus masou masou 2
163 サツキマス(アマゴ) Oncorhynchus masou ishikawae 2
164 ビワマス Oncorhynchus masou rhodurus 1
165 タウナギ(本土産) Monopterus albus 5
166 タウナギ(沖縄産) Monopterus sp. × -
167 イトヨ Gasterosteus aculeatus aculeatus 1
168 ハリヨ Gasterosteus aculeatus microcephalus 1
169 ニホンイトヨ Gasterosteus nipponicus 1
170 エゾトミヨ Pungitius tymensis 3
171 ミナミトミヨ Pungitius kaibarae 4
172 トミヨ属雄物型 Pungitius sp Omono 1
173 トミヨ属淡水型 Pungitius sp Freshwater 1
174 トミヨ属汽水型 Pungitius sp Brackish 1
175 ムサシトミヨ Pungitius sp MUSASHI TOMIYO 1
176 アミメカワヨウジ Hippichthys heptagonus 2
177 ホシイッセンヨウジ Microphis argulus × -
178 ヒメテングヨウジ Microphis jagorii -
179 タニヨウジ Microphis retzii × -
180 カワボラ Cestraeus plicatilis 1
181 ナガレフウライボラ Crenimugil heterocheilos × -
182 オニボラ Ellochelon vaigiensis 3
183 アンピンボラ Chelon subviridis 1
184 カマヒレボラ Moolgarda pedaraki 3
185 モンナシボラ Moolgarda engeli 1
186 ペヘレイ Odontesthes bonariensis 2
187 ネッタイイソイワシ Atherinomorus duodecimalis 2
188 ミナミギンイソイワシ Hypoatherina temminckii 2
189 グリーンソードテール Xiphophorus hellerii 3
190 カダヤシ Gambusia affinis 2
191 グッピー Poecilia reticulata 4
192 ミナミメダカ Oryzias latipes 18
193 キタノメダカ Oryzias sakaizumii 9
194 コモチサヨリ Zenarchopterus dunckeri 3
195 クルメサヨリ Hyporhamphus intermedius 2
196 アゴヒゲオコゼ Tetraroge barbata 1
197 ヒゲソリオコゼ Tetraroge nigra × -
198 アカメ Lates japonicus 3
199 インドタカサゴイシモチ Pseudambassis ranga -
200 ナンヨウタカサゴイシモチ Ambassis interrupta × 1
201 ハナダカタカサゴイシモチ Ambassis macracanthus × -
202 オヤニラミ Coreoperca kawamebari 2
203 スズキ Lateolabrax japonicus 5
204 シラヌイハタ Epinephelus bontoides 2
205 ブルーギル Lepomis macrochirus 5
206 オオクチバス Micropterus salmoides 3
207 コクチバス Micropterus dolomieu 3
208 カガミテンジクダイ Yarica hyalosoma -
209 ワキイシモチ Fibramia lateralis -
210 ヒルギヌメリテンジクダイ Pseudamia amblyuroptera 1
211 ウラウチフエダイ Lutjanus goldiei × -
212 ダイダイコショウダイ Plectorhinchus albovittatus × -
213 ナンヨウチヌ Acanthopagrus pacificus 1
214 アオギス Sillago parvisquamis 2
215 アトクギス Sillaginops macrolepis × 1
216 テッポウウオ Toxotes chatareus × 2
217 カワスズメ Oreochromis mossambicus 1
218 ナイルティラピア Oreochromis niloticus 11
219 ジルティラピア Coptodon zillii 2
220 ヨコシマイサキ Mesopristes cancellatus 2
221 ニセシマイサキ Mesopristes argenteus × 1
222 シミズシマイサキ Mesopristes iravi × 1
223 トゲナガユゴイ Kuhlia munda × -
224 ヤマノカミ Trachidermus fasciatus 2
225 カマキリ Cottus kazika 3
226 カジカ Cottus pollux 6
227 カジカ中卵型 Cottus sp ME 1
228 カジカ小卵型 Cottus reinii 4
229 カンキョウカジカ Cottus hangiongensis 3
230 ハナカジカ Cottus nozawae 3
231 エゾハナカジカ Cottus amblystomopsis 4
232 ウラウチヘビギンポ Enneapterygius cheni × -
233 ヒルギギンポ Omox biporos × -
234 ゴマクモギンポ Omobranchus elongatus 1
235 カワギンポ Omobranchus ferox × -
236 ナリタイトヒキヌメリ Pseudocalliurichthys ikedai × -
237 ツバサハゼ Rhyacichthys aspro 2
238 ドンコ Odontobutis obscura 10
239 イシドンコ Odontobutis hikimius 1
240 タナゴモドキ Hypseleotris cyprinoides 1
241 オウギハゼ Bunaka gyrinoides × 1
242 カワアナゴ Eleotris oxycephala 5
243 テンジクカワアナゴ Eleotris fusca 4
244 エリトゲハゼ Belobranchus belobranchus × -
245 ヤエヤマノコギリハゼ Butis amboinensis 1
246 ジャノメハゼ Bostrychus sinensis 6
247 ホシマダラハゼ Ophiocara porocephala 2
248 タメトモハゼ Ophieleotris sp TAMETOMO HAZE 1
249 ゴシキタメトモハゼ Giuris sp. 2 × -
250 ドウクツミミズハゼ Luciogobius albus × -
251 ネムリミミズハゼ Luciogobius dormitoris × -
252 イドミミズハゼ Luciogobius pallidus 2
253 ナガレミミズハゼ Luciogobius fluvialis × -
254 ユウスイミミズハゼ Luciogobius fonticola × 1
255 ミナミヒメミミズハゼ Luciogobius ryukyuensis 2
256 ヒモハゼ Eutaeniichthys gilli 1
257 シロウオ Leucopsarion petersii 4
258 ワラスボ Odontamblyopus lacepedii 1
259 アサガラハゼ Caragobius urolepis 1
260 チワラスボ Taenioides cirratus 2
261 ヒゲワラスボ Trypauchenopsis intermedia 2
262 トカゲハゼ Scartelaos histophorus 1
263 ムツゴロウ Boleophthalmus pectinirostris 3
264 タビラクチ Apocryptodon punctatus 1
265 トビハゼ Periophthalmus modestus 4
266 トサカハゼ Cristatogobius lophius 2
267 ヒメトサカハゼ Cristatogobius aurimaculatus × -
268 クロトサカハゼ Cristatogobius nonatoae -
269 シマサルハゼ Oxyurichthys sp. 2 × -
270 ミスジハゼ Callogobius sp MISUJI HAZE × 1
271 ハゼクチ Acanthogobius hasta 6
272 ミナミアシシロハゼ Acanthogobius insularis × 1
273 ヨロイボウズハゼ Lentipes armatus 1
274 カエルハゼ Smilosicyopus leprurus × -
275 アカボウズハゼ Sicyopus zosterophorum × 1
276 ヒノコロモボウズハゼ Sicyopus auxilimentus × -
277 ルリボウズハゼ Sicyopterus lagocephalus 5
278 ボウズハゼ Sicyopterus japonicus 7
279 カキイロヒメボウズハゼ Stiphodon surrufus × -
280 ナンヨウボウズハゼ Stiphodon percnopterygionus 2
281 ハヤセボウズハゼ Stiphodon imperiorientis × -
282 コンテリボウズハゼ Stiphodon atropurpureus × -
283 ヒスイボウズハゼ Stiphodon alcedo 1
284 ニライカナイボウズハゼ Stiphodon niraikanaiensis × -
285 トラフボウズハゼ Stiphodon multisquamus × -
286 ワカケサラサハゼ Amblygobius linki × -
287 シラヌイハゼ Silhouettea dotui × -
288 ニセシラヌイハゼ Silhouettea sp. × -
289 ギンポハゼ Parkraemeria saltator 1
290 マングローブゴマハゼ Pandaka lidwilli 1
291 ゴマハゼ Pandaka sp. × -
292 カブキハゼ Eugnathogobius mindora × -
293 フタホシハゼ Mugilogobius fuscus × -
294 ホホグロハゼ Mugilogobius cavifrons 1
295 ムジナハゼ Mugilogobius mertoni × 1
296 マサゴハゼ Pseudogobius masago 2
297 コクチスナゴハゼ Pseudogobius sp KOKUCHI SUNAGO HAZE × 1
298 エソハゼ Schismatogobius roxasi 1
299 シマエソハゼ Schismatogobius ampluvinculus × 24
300 タネカワハゼ Stenogobius sp TANEKAWA HAZE 1
301 ドウケハゼ Stenogobius ophthalmoporus × -
302 クロミナミハゼ Awaous melanocephalus 1
303 シロチチブ Tridentiger nudicervicus × -
304 ショウキハゼ Tridentiger barbatus 3
305 アカオビシマハゼ Tridentiger trigonocephalus 5
306 シモフリシマハゼ Tridentiger bifasciatus 4
307 ヌマチチブ Tridentiger brevispinis 2
308 チチブ Tridentiger obscurus 5
309 ナガノゴリ Tridentiger kuroiwae 2
310 タスキヒナハゼ Redigobius balteatus 1
311 カワクモハゼ Bathygobius sp. × -
312 ヒラヨシノボリ Rhinogobius sp.DL × -
313 カワヨシノボリ Rhinogobius flumineus 3
314 シマヨシノボリ Rhinogobius nagoyae 2
315 ルリヨシノボリ Rhinogobius mizunoi 1
316 アヤヨシノボリ Rhinogobius sp MO 1
317 オオヨシノボリ Rhinogobius fluviatilis 2
318 クロヨシノボリ Rhinogobius brunneus 9
319 オガサワラヨシノボリ Rhinogobius ogasawaraensis 1
320 ゴクラクハゼ Rhinogobius giurinus 8
321 アオバラヨシノボリ Rhinogobius sp BB × -
322 トウカイヨシノボリ Rhinogobius sp TO 1
323 クロダハゼ Rhinogobius kurodai × -
324 シマヒレヨシノボリ Rhinogobius nagoyae 2
325 キバラヨシノボリ Rhinogobius sp YB 1
326 ビワヨシノボリ Rhinogobius biwaensis 1
327 カズサヨシノボリ Rhinogobius sp KZ 2
328 オウミヨシノボリ Rhinogobius sp OM 1
329 旧トウヨシノボリ類 Rhinogobius sp OR 4
330 アゴヒゲハゼ Glossogobius bicirrhosus × -
331 スダレウロハゼ Glossogobius circumspectus × 2
332 コンジキハゼ Glossogobius aureus 2
333 フタゴハゼ Glossogobius sp × 1
334 ホクロハゼ Acentrogobius caninus 4
335 キララハゼ Acentrogobius viridipunctatus × -
336 ニセツムギハゼ Acentrogobius audax × -
337 ホホグロスジハゼ Acentrogobius suluensis × -
338 イサザ Gymnogobius isaza 1
339 スミウキゴリ Gymnogobius petschiliensis 4
340 ウキゴリ Gymnogobius urotaenia 6
341 シマウキゴリ Gymnogobius opperiens 3
342 ヘビハゼ Gymnogobius mororanus 2
343 シンジコハゼ Gymnogobius taranetzi -
344 ジュズカケハゼ Gymnogobius castaneus 6
345 コシノハゼ Gymnogobius nakamurae × -
346 ムサシノジュズカケハゼ Gymnogobius sp1 MUSASHINO JUZUKAKE HAZE 1
347 ホクリクジュズカケハゼ Gymnogobius sp HOKURIKU JUZUKAKE HAZE 1
348 チクゼンハゼ Gymnogobius uchidai 2
349 クボハゼ Gymnogobius scrobiculatus 1
350 キセルハゼ Gymnogobius cylindricus × 1
351 エドハゼ Gymnogobius macrognathos 1
352 ウラウチイソハゼ Eviota ocellifer × 1
353 ナミノコハゼ Gobitrichinotus radiocularis × -
354 トンガスナハゼ Kraemeria tongaensis × -
355 マイコハゼ Parioglossus lineatus × -
356 コマチハゼ Parioglossus taeniatus × -
357 ボルネオハゼ Parioglossus palustris × 1
358 コビトハゼ Parioglossus rainfordi × -
359 ヒメサツキハゼ Parioglossus interruptus × -
360 クジャクハゼ Parioglossus caeruleolineatus × -
361 タイワンキンギョ Macropodus opercularis 2
362 チョウセンブナ Macropodus ocellatus 2
363 コウタイ Channa asiatica 3
364 タイワンドジョウ Channa maculata 4
365 カムルチー Channa argus 16
366 クサフグ Takifugu alboplumbeus 1
377 カタクチイワシ Engraulis japonicus Y 5
378 マアジ Trachurus japonicus Y 6
379 ボラ Mugil cephalus Y 16

※注意点
作業が半自動で、なおかつデータごとに学名表記の揺らぎがあるので、配列数は必ずしも正しいものではありません。また、NCBIの配列データ更新が活発なので、すぐに配列数は変わると思います。